Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv4367524

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:133,335

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1532 SVs from 97 studies. See in: genome view

Remapped(Score: Perfect):17,511,907-17,645,241

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4367524	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	17,511,907	17,645,241
nsv4367524	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	17,512,016	17,645,350

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15623859	copy number loss	1-0248-003	SNP array	Genotyping	22
nssv15652512	copy number loss	2-1526-002	SNP array	Genotyping	17
nssv15658735	copy number loss	3-0602-000	SNP array	Genotyping	28
nssv15679514	copy number loss	237800S	SNP array	Genotyping	16
nssv15680186	copy number loss	222683	SNP array	Genotyping	21
nssv15681025	copy number loss	181228	SNP array	Genotyping	21
nssv15702782	copy number loss	212968	SNP array	Genotyping	25

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15623859	Remapped	Perfect	NC_000005.10:g.(?_ 17511907)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,511,907	17,645,241
nssv15652512	Remapped	Perfect	NC_000005.10:g.(?_ 17511907)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,511,907	17,645,241
nssv15658735	Remapped	Perfect	NC_000005.10:g.(?_ 17511907)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,511,907	17,645,241
nssv15679514	Remapped	Perfect	NC_000005.10:g.(?_ 17511907)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,511,907	17,645,241
nssv15680186	Remapped	Perfect	NC_000005.10:g.(?_ 17511907)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,511,907	17,645,241
nssv15681025	Remapped	Perfect	NC_000005.10:g.(?_ 17511907)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,511,907	17,645,241
nssv15702782	Remapped	Perfect	NC_000005.10:g.(?_ 17511907)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,511,907	17,645,241
nssv15623859	Submitted genomic		NC_000005.9:g.(?_1 7512016)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,512,016	17,645,350
nssv15652512	Submitted genomic		NC_000005.9:g.(?_1 7512016)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,512,016	17,645,350
nssv15658735	Submitted genomic		NC_000005.9:g.(?_1 7512016)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,512,016	17,645,350
nssv15679514	Submitted genomic		NC_000005.9:g.(?_1 7512016)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,512,016	17,645,350
nssv15680186	Submitted genomic		NC_000005.9:g.(?_1 7512016)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,512,016	17,645,350
nssv15681025	Submitted genomic		NC_000005.9:g.(?_1 7512016)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,512,016	17,645,350
nssv15702782	Submitted genomic		NC_000005.9:g.(?_1 7512016)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,512,016	17,645,350

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI