nsv4367761
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:59,041
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 965 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 1020 SVs from 85 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4367761 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 23,375,019 | 23,434,059 |
| nsv4367761 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 23,620,166 | 23,679,206 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15613756 | copy number loss | 1-0721-003 | SNP array | Genotyping | 17 |
| nssv15621143 | copy number loss | 1-0190-002 | SNP array | Genotyping | 23 |
| nssv15633785 | copy number loss | 10-1129-002 | SNP array | Genotyping | 26 |
| nssv15676828 | copy number loss | 178027 | SNP array | Genotyping | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15613756 | Remapped | Perfect | NC_000015.10:g.(?_ 23375019)_(2343405 9_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 23,375,019 | 23,434,059 |
| nssv15621143 | Remapped | Perfect | NC_000015.10:g.(?_ 23375019)_(2343405 9_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 23,375,019 | 23,434,059 |
| nssv15633785 | Remapped | Perfect | NC_000015.10:g.(?_ 23375019)_(2343405 9_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 23,375,019 | 23,434,059 |
| nssv15676828 | Remapped | Perfect | NC_000015.10:g.(?_ 23375019)_(2343405 9_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 23,375,019 | 23,434,059 |
| nssv15613756 | Submitted genomic | NC_000015.9:g.(?_2 3620166)_(23679206 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,620,166 | 23,679,206 | ||
| nssv15621143 | Submitted genomic | NC_000015.9:g.(?_2 3620166)_(23679206 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,620,166 | 23,679,206 | ||
| nssv15633785 | Submitted genomic | NC_000015.9:g.(?_2 3620166)_(23679206 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,620,166 | 23,679,206 | ||
| nssv15676828 | Submitted genomic | NC_000015.9:g.(?_2 3620166)_(23679206 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,620,166 | 23,679,206 |