nsv4368492
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:33,035
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 222 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 222 SVs from 51 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4368492 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nsv4368492 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15615079 | copy number loss | 1-0746-003 | SNP array | Genotyping | 21 |
| nssv15620148 | copy number loss | 1-0945-003 | SNP array | Genotyping | 24 |
| nssv15620484 | copy number loss | 1-0937-003 | SNP array | Genotyping | 21 |
| nssv15622709 | copy number loss | 1-1024-003 | SNP array | Genotyping | 13 |
| nssv15623018 | copy number loss | 1-1044-003 | SNP array | Genotyping | 16 |
| nssv15623036 | copy number loss | 1-1044-004 | SNP array | Genotyping | 19 |
| nssv15656852 | copy number loss | 3-0658-000 | SNP array | Genotyping | 20 |
| nssv15657862 | copy number loss | 3-0396-000 | SNP array | Genotyping | 17 |
| nssv15675381 | copy number loss | 232809S | SNP array | Genotyping | 24 |
| nssv15681202 | copy number loss | 244412S | SNP array | Genotyping | 23 |
| nssv15683453 | copy number loss | OCD124-B_188563 | SNP array | Genotyping | 28 |
| nssv15685705 | copy number loss | OCD17-S_896322 | SNP array | Genotyping | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15615079 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15620148 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15620484 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15622709 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15623018 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15623036 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15656852 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15657862 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15675381 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15681202 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15683453 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15685705 | Remapped | Perfect | NC_000003.12:g.(?_ 96566284)_(9659931 8_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 96,566,284 | 96,599,318 |
| nssv15615079 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15620148 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15620484 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15622709 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15623018 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15623036 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15656852 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15657862 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15675381 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15681202 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15683453 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 | ||
| nssv15685705 | Submitted genomic | NC_000003.11:g.(?_ 96285128)_(9631816 2_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 96,285,128 | 96,318,162 |