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dbVar

Database of genomic structural variation

nsv4369549

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:24,754

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 381 SVs from 63 studies. See in: genome view

Remapped(Score: Perfect):89,345,472-89,370,225

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4369549	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	89,345,472	89,370,225
nsv4369549	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	89,394,622	89,419,375

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15632434	copy number loss	10-0005-003	SNP array	Genotyping	11
nssv15678667	copy number loss	165011	SNP array	Genotyping	30
nssv15697129	copy number loss	153924	SNP array	Genotyping	13
nssv15698637	copy number loss	159008	SNP array	Genotyping	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15632434	Remapped	Perfect	NC_000003.12:g.(?_ 89345472)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,345,472	89,370,225
nssv15678667	Remapped	Perfect	NC_000003.12:g.(?_ 89345472)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,345,472	89,370,225
nssv15697129	Remapped	Perfect	NC_000003.12:g.(?_ 89345472)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,345,472	89,370,225
nssv15698637	Remapped	Perfect	NC_000003.12:g.(?_ 89345472)_(8937022 5_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,345,472	89,370,225
nssv15632434	Submitted genomic		NC_000003.11:g.(?_ 89394622)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,394,622	89,419,375
nssv15678667	Submitted genomic		NC_000003.11:g.(?_ 89394622)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,394,622	89,419,375
nssv15697129	Submitted genomic		NC_000003.11:g.(?_ 89394622)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,394,622	89,419,375
nssv15698637	Submitted genomic		NC_000003.11:g.(?_ 89394622)_(8941937 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,394,622	89,419,375

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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