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dbVar

Database of genomic structural variation

nsv4369632

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:80,041

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2826 SVs from 113 studies. See in: genome view

Remapped(Score: Perfect):29,873,244-29,953,284

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4369632	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	29,873,244	29,953,284
nsv4369632	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	29,841,021	29,921,061

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15612403	copy number loss	1-0668-003	SNP array	Genotyping	21
nssv15629497	copy number loss	1-0565-001	SNP array	Genotyping	19
nssv15635219	copy number loss	13-0049-004	SNP array	Genotyping	27
nssv15658418	copy number loss	4-0038-001	SNP array	Genotyping	22
nssv15660765	copy number loss	5-0065-001	SNP array	Genotyping	20
nssv15667301	copy number loss	7-0157-003	SNP array	Genotyping	30
nssv15675102	copy number loss	218106	SNP array	Genotyping	23
nssv15686367	copy number loss	OCD134-S_0625-8972-2	SNP array	Genotyping	22

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15612403	Remapped	Perfect	NC_000006.12:g.(?_ 29873244)_(2995328 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,873,244	29,953,284
nssv15629497	Remapped	Perfect	NC_000006.12:g.(?_ 29873244)_(2995328 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,873,244	29,953,284
nssv15635219	Remapped	Perfect	NC_000006.12:g.(?_ 29873244)_(2995328 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,873,244	29,953,284
nssv15658418	Remapped	Perfect	NC_000006.12:g.(?_ 29873244)_(2995328 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,873,244	29,953,284
nssv15660765	Remapped	Perfect	NC_000006.12:g.(?_ 29873244)_(2995328 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,873,244	29,953,284
nssv15667301	Remapped	Perfect	NC_000006.12:g.(?_ 29873244)_(2995328 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,873,244	29,953,284
nssv15675102	Remapped	Perfect	NC_000006.12:g.(?_ 29873244)_(2995328 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,873,244	29,953,284
nssv15686367	Remapped	Perfect	NC_000006.12:g.(?_ 29873244)_(2995328 4_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	29,873,244	29,953,284
nssv15612403	Submitted genomic		NC_000006.11:g.(?_ 29841021)_(2992106 1_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	29,841,021	29,921,061
nssv15629497	Submitted genomic		NC_000006.11:g.(?_ 29841021)_(2992106 1_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	29,841,021	29,921,061
nssv15635219	Submitted genomic		NC_000006.11:g.(?_ 29841021)_(2992106 1_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	29,841,021	29,921,061
nssv15658418	Submitted genomic		NC_000006.11:g.(?_ 29841021)_(2992106 1_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	29,841,021	29,921,061
nssv15660765	Submitted genomic		NC_000006.11:g.(?_ 29841021)_(2992106 1_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	29,841,021	29,921,061
nssv15667301	Submitted genomic		NC_000006.11:g.(?_ 29841021)_(2992106 1_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	29,841,021	29,921,061
nssv15675102	Submitted genomic		NC_000006.11:g.(?_ 29841021)_(2992106 1_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	29,841,021	29,921,061
nssv15686367	Submitted genomic		NC_000006.11:g.(?_ 29841021)_(2992106 1_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	29,841,021	29,921,061

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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