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dbVar

Database of genomic structural variation

nsv4369664

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:47,859

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 491 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):34,637,754-34,685,612

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4369664	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	34,637,754	34,685,612
nsv4369664	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	34,929,955	34,977,813

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15631799	copy number loss	10-0020-001	SNP array	Genotyping	19
nssv15633997	copy number loss	11-0021-001	SNP array	Genotyping	27
nssv15639513	copy number loss	14-0231-003	SNP array	Genotyping	19
nssv15639534	copy number loss	14-0231-004	SNP array	Genotyping	23
nssv15664638	copy number loss	4-0078-002	SNP array	Genotyping	34
nssv15668764	copy number loss	7-0226-003	SNP array	Genotyping	14
nssv15692446	copy number loss	OCD62-AI-1458	SNP array	Genotyping	20
nssv15700530	copy number loss	186279	SNP array	Genotyping	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15631799	Remapped	Perfect	NC_000015.10:g.(?_ 34637754)_(3468561 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	34,637,754	34,685,612
nssv15633997	Remapped	Perfect	NC_000015.10:g.(?_ 34637754)_(3468561 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	34,637,754	34,685,612
nssv15639513	Remapped	Perfect	NC_000015.10:g.(?_ 34637754)_(3468561 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	34,637,754	34,685,612
nssv15639534	Remapped	Perfect	NC_000015.10:g.(?_ 34637754)_(3468561 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	34,637,754	34,685,612
nssv15664638	Remapped	Perfect	NC_000015.10:g.(?_ 34637754)_(3468561 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	34,637,754	34,685,612
nssv15668764	Remapped	Perfect	NC_000015.10:g.(?_ 34637754)_(3468561 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	34,637,754	34,685,612
nssv15692446	Remapped	Perfect	NC_000015.10:g.(?_ 34637754)_(3468561 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	34,637,754	34,685,612
nssv15700530	Remapped	Perfect	NC_000015.10:g.(?_ 34637754)_(3468561 2_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	34,637,754	34,685,612
nssv15631799	Submitted genomic		NC_000015.9:g.(?_3 4929955)_(34977813 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	34,929,955	34,977,813
nssv15633997	Submitted genomic		NC_000015.9:g.(?_3 4929955)_(34977813 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	34,929,955	34,977,813
nssv15639513	Submitted genomic		NC_000015.9:g.(?_3 4929955)_(34977813 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	34,929,955	34,977,813
nssv15639534	Submitted genomic		NC_000015.9:g.(?_3 4929955)_(34977813 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	34,929,955	34,977,813
nssv15664638	Submitted genomic		NC_000015.9:g.(?_3 4929955)_(34977813 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	34,929,955	34,977,813
nssv15668764	Submitted genomic		NC_000015.9:g.(?_3 4929955)_(34977813 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	34,929,955	34,977,813
nssv15692446	Submitted genomic		NC_000015.9:g.(?_3 4929955)_(34977813 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	34,929,955	34,977,813
nssv15700530	Submitted genomic		NC_000015.9:g.(?_3 4929955)_(34977813 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	34,929,955	34,977,813

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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