nsv4369698
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:80,071
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 483 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 483 SVs from 72 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4369698 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nsv4369698 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15611641 | copy number gain | 1-0653-001 | SNP array | Genotyping | 19 |
| nssv15641351 | copy number gain | 14-0344-001 | SNP array | Genotyping | 24 |
| nssv15652864 | copy number gain | 2-1549-002 | SNP array | Genotyping | 30 |
| nssv15654734 | copy number gain | 3-0261-000 | SNP array | Genotyping | 82 |
| nssv15660724 | copy number gain | 5-0044-001 | SNP array | Genotyping | 21 |
| nssv15664068 | copy number gain | 189472 | SNP array | Genotyping | 18 |
| nssv15672898 | copy number gain | 9-0009-001 | SNP array | Genotyping | 20 |
| nssv15682795 | copy number gain | OCD1154-S_HAM513 | SNP array | Genotyping | 18 |
| nssv15684112 | copy number gain | OCD106-1609 | SNP array | Genotyping | 18 |
| nssv15689201 | copy number gain | 234384 | SNP array | Genotyping | 23 |
| nssv15689510 | copy number gain | OCD106-1607(313) | SNP array | Genotyping | 23 |
| nssv15698548 | copy number gain | 222720 | SNP array | Genotyping | 24 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15611641 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15641351 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15652864 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15654734 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15660724 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15664068 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15672898 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15682795 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15684112 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15689201 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15689510 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15698548 | Remapped | Perfect | NC_000011.10:g.(?_ 37733110)_(3781318 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 37,733,110 | 37,813,180 |
| nssv15611641 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15641351 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15652864 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15654734 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15660724 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15664068 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15672898 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15682795 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15684112 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15689201 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15689510 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 | ||
| nssv15698548 | Submitted genomic | NC_000011.9:g.(?_3 7754660)_(37834730 _?)dup | GRCh37 (hg19) | NC_000011.9 | Chr11 | 37,754,660 | 37,834,730 |