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dbVar

Database of genomic structural variation

nsv4370234

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:100,825

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1690 SVs from 93 studies. See in: genome view

Remapped(Score: Perfect):68,570,171-68,670,995

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4370234	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	68,570,171	68,670,995
nsv4370234	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	69,435,889	69,536,713

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15627543	copy number gain	1-0489-001	SNP array	Genotyping	21
nssv15648077	copy number gain	2-1342-002	SNP array	Genotyping	21
nssv15653451	copy number gain	2-1559-004	SNP array	Genotyping	18
nssv15657648	copy number gain	4-0039-003	SNP array	Genotyping	21
nssv15659746	copy number gain	4-0070-004	SNP array	Genotyping	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15627543	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6867099 5_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,670,995
nssv15648077	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6867099 5_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,670,995
nssv15653451	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6867099 5_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,670,995
nssv15657648	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6867099 5_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,670,995
nssv15659746	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6867099 5_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,670,995
nssv15627543	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6953671 3_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,536,713
nssv15648077	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6953671 3_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,536,713
nssv15653451	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6953671 3_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,536,713
nssv15657648	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6953671 3_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,536,713
nssv15659746	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6953671 3_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,536,713

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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