nsv4370571

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:34
Validation:Not tested
Clinical Assertions: No
Region Size:24,459

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 526 SVs from 67 studies. See in: genome view

Remapped(Score: Perfect):9,901,840-9,926,298

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4370571	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nsv4370571	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	9,901,952	9,926,410

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15615614	copy number loss	1-0799-003	SNP array	Genotyping	19
nssv15616813	copy number loss	1-0807-003	SNP array	Genotyping	22
nssv15620580	copy number loss	1-0950-003	SNP array	Genotyping	27
nssv15627190	copy number loss	1-0479-003	SNP array	Genotyping	20
nssv15627249	copy number loss	1-0479-007	SNP array	Genotyping	21
nssv15630080	copy number loss	1-0632-003	SNP array	Genotyping	19
nssv15630689	copy number loss	1-0600-003	SNP array	Genotyping	25
nssv15630710	copy number loss	1-0602-004	SNP array	Genotyping	19
nssv15633863	copy number loss	10-1149-002	SNP array	Genotyping	18
nssv15634872	copy number loss	12-8214-003	SNP array	Genotyping	24
nssv15635823	copy number loss	12-4173-001	SNP array	Genotyping	12
nssv15635854	copy number loss	12-4173-003	SNP array	Genotyping	12
nssv15640858	copy number loss	14-0273-003	SNP array	Genotyping	16
nssv15641565	copy number loss	14-0170-001	SNP array	Genotyping	29
nssv15641989	copy number loss	15-1127-001	SNP array	Genotyping	21
nssv15642858	copy number loss	15-1111-001	SNP array	Genotyping	18
nssv15646657	copy number loss	2-1272-003	SNP array	Genotyping	15
nssv15646690	copy number loss	2-1272-005	SNP array	Genotyping	14
nssv15656122	copy number loss	3-0657-001	SNP array	Genotyping	18
nssv15660558	copy number loss	5-0006-003	SNP array	Genotyping	24
nssv15660783	copy number loss	5-0065-002	SNP array	Genotyping	20
nssv15663694	copy number loss	5-1012-003	SNP array	Genotyping	26
nssv15664629	copy number loss	4-0078-001	SNP array	Genotyping	13
nssv15667667	copy number loss	5-1001-003	SNP array	Genotyping	21
nssv15667757	copy number loss	7-0059-003	SNP array	Genotyping	18
nssv15669909	copy number loss	7-0254-001	SNP array	Genotyping	20
nssv15670074	copy number loss	7-0255-003	SNP array	Genotyping	24
nssv15671402	copy number loss	7-0283-003	SNP array	Genotyping	14
nssv15678381	copy number loss	208583	SNP array	Genotyping	20
nssv15679626	copy number loss	182134	SNP array	Genotyping	15
nssv15689279	copy number loss	OCD10-S_896171	SNP array	Genotyping	23
nssv15689711	copy number loss	OCD1122-896053	SNP array	Genotyping	22
nssv15694263	copy number loss	OCD84-896821	SNP array	Genotyping	17
nssv15700552	copy number loss	158194	SNP array	Genotyping	17

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15615614	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15616813	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15620580	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15627190	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15627249	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15630080	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15630689	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15630710	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15633863	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15634872	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15635823	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15635854	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15640858	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15641565	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15641989	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15642858	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15646657	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15646690	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15656122	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15660558	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15660783	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15663694	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15664629	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15667667	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15667757	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15669909	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15670074	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15671402	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15678381	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15679626	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15689279	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15689711	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15694263	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15700552	Remapped	Perfect	NC_000005.10:g.(?_ 9901840)_(9926298_ ?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	9,901,840	9,926,298
nssv15615614	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15616813	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15620580	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15627190	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15627249	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15630080	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15630689	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15630710	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15633863	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15634872	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15635823	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15635854	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15640858	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15641565	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15641989	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15642858	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15646657	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15646690	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15656122	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15660558	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15660783	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15663694	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15664629	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15667667	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15667757	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15669909	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15670074	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15671402	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15678381	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15679626	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15689279	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15689711	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15694263	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410
nssv15700552	Submitted genomic		NC_000005.9:g.(?_9 901952)_(9926410_? )del	GRCh37 (hg19)		NC_000005.9	Chr5	9,901,952	9,926,410

dbVar

Database of genomic structural variation

nsv4370571

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant