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dbVar

Database of genomic structural variation

nsv4370719

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:28,047

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 158 SVs from 34 studies. See in: genome view

Remapped(Score: Perfect):152,022,583-152,050,629

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4370719	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	152,022,583	152,050,629
nsv4370719	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	152,343,718	152,371,764

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15643661	copy number loss	2-0018-003	SNP array	Genotyping	23
nssv15646456	copy number loss	2-1186-004	SNP array	Genotyping	28
nssv15646859	copy number loss	2-1089-003	SNP array	Genotyping	19
nssv15646877	copy number loss	2-1089-004	SNP array	Genotyping	19
nssv15656298	copy number loss	4-0001-004	SNP array	Genotyping	19
nssv15673896	copy number loss	9-0024-003	SNP array	Genotyping	23

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15643661	Remapped	Perfect	NC_000006.12:g.(?_ 152022583)_(152050 629_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	152,022,583	152,050,629
nssv15646456	Remapped	Perfect	NC_000006.12:g.(?_ 152022583)_(152050 629_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	152,022,583	152,050,629
nssv15646859	Remapped	Perfect	NC_000006.12:g.(?_ 152022583)_(152050 629_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	152,022,583	152,050,629
nssv15646877	Remapped	Perfect	NC_000006.12:g.(?_ 152022583)_(152050 629_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	152,022,583	152,050,629
nssv15656298	Remapped	Perfect	NC_000006.12:g.(?_ 152022583)_(152050 629_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	152,022,583	152,050,629
nssv15673896	Remapped	Perfect	NC_000006.12:g.(?_ 152022583)_(152050 629_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	152,022,583	152,050,629
nssv15643661	Submitted genomic		NC_000006.11:g.(?_ 152343718)_(152371 764_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	152,343,718	152,371,764
nssv15646456	Submitted genomic		NC_000006.11:g.(?_ 152343718)_(152371 764_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	152,343,718	152,371,764
nssv15646859	Submitted genomic		NC_000006.11:g.(?_ 152343718)_(152371 764_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	152,343,718	152,371,764
nssv15646877	Submitted genomic		NC_000006.11:g.(?_ 152343718)_(152371 764_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	152,343,718	152,371,764
nssv15656298	Submitted genomic		NC_000006.11:g.(?_ 152343718)_(152371 764_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	152,343,718	152,371,764
nssv15673896	Submitted genomic		NC_000006.11:g.(?_ 152343718)_(152371 764_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	152,343,718	152,371,764

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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