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dbVar

Database of genomic structural variation

nsv4370933

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:25,180

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 198 SVs from 30 studies. See in: genome view

Remapped(Score: Perfect):30,002,918-30,028,097

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4370933	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	30,002,918	30,028,097
nsv4370933	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	30,493,825	30,519,004

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15635419	copy number loss	12-4236-001	SNP array	Genotyping	22
nssv15635864	copy number loss	12-4236-002	SNP array	Genotyping	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15635419	Remapped	Perfect	NC_000019.10:g.(?_ 30002918)_(3002809 7_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	30,002,918	30,028,097
nssv15635864	Remapped	Perfect	NC_000019.10:g.(?_ 30002918)_(3002809 7_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	30,002,918	30,028,097
nssv15635419	Submitted genomic		NC_000019.9:g.(?_3 0493825)_(30519004 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	30,493,825	30,519,004
nssv15635864	Submitted genomic		NC_000019.9:g.(?_3 0493825)_(30519004 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	30,493,825	30,519,004

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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