nsv4371390
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:37
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,765,645
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 7309 SVs from 131 studies. See in: genome view
Overlapping variant regions from other studies: 5448 SVs from 124 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4371390 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nsv4371390 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15612460 | copy number gain | 1-0671-003 | SNP array | Genotyping | 14 |
| nssv15621260 | copy number gain | 1-0989-004 | SNP array | Genotyping | 15 |
| nssv15623145 | copy number gain | 1-1060-003 | SNP array | Genotyping | 26 |
| nssv15623526 | copy number gain | 1-0269-001 | SNP array | Genotyping | 16 |
| nssv15631985 | copy number gain | 1-1063-003 | SNP array | Genotyping | 30 |
| nssv15633990 | copy number gain | 11-0021-001 | SNP array | Genotyping | 27 |
| nssv15637112 | copy number gain | 12-4676-001 | SNP array | Genotyping | 24 |
| nssv15640196 | copy number gain | 14-0119-004 | SNP array | Genotyping | 18 |
| nssv15643292 | copy number gain | 14-0364-001 | SNP array | Genotyping | 22 |
| nssv15643344 | copy number gain | 14-0364-004 | SNP array | Genotyping | 22 |
| nssv15644954 | copy number gain | 2-0270-003 | SNP array | Genotyping | 20 |
| nssv15644976 | copy number gain | 2-0270-004 | SNP array | Genotyping | 13 |
| nssv15646495 | copy number gain | 2-1189-003 | SNP array | Genotyping | 24 |
| nssv15648768 | copy number gain | 2-1285-003 | SNP array | Genotyping | 26 |
| nssv15649686 | copy number gain | 2-1329-002 | SNP array | Genotyping | 14 |
| nssv15651328 | copy number gain | 2-1371-002 | SNP array | Genotyping | 18 |
| nssv15656001 | copy number gain | 3-0526-000 | SNP array | Genotyping | 17 |
| nssv15658200 | copy number loss | 3-0646-000 | SNP array | Genotyping | 15 |
| nssv15663864 | copy number gain | 5-0140-002 | SNP array | Genotyping | 24 |
| nssv15668138 | copy number gain | 7-0207-003 | SNP array | Genotyping | 27 |
| nssv15677351 | copy number gain | 242269S | SNP array | Genotyping | 26 |
| nssv15678012 | copy number gain | 241962S | SNP array | Genotyping | 24 |
| nssv15678799 | copy number gain | 174227 | SNP array | Genotyping | 12 |
| nssv15678893 | copy number gain | 183433 | SNP array | Genotyping | 27 |
| nssv15679807 | copy number gain | 208585 | SNP array | Genotyping | 15 |
| nssv15680586 | copy number gain | 215105 | SNP array | Genotyping | 32 |
| nssv15682346 | copy number gain | OCD110-B_1654 | SNP array | Genotyping | 23 |
| nssv15687740 | copy number gain | OCD18-S_896352 | SNP array | Genotyping | 20 |
| nssv15695996 | copy number gain | 160878 | SNP array | Genotyping | 17 |
| nssv15696095 | copy number gain | 155473 | SNP array | Genotyping | 18 |
| nssv15697942 | copy number gain | 216640 | SNP array | Genotyping | 17 |
| nssv15698828 | copy number gain | 170926 | SNP array | Genotyping | 21 |
| nssv15699534 | copy number loss | 156227 | SNP array | Genotyping | 29 |
| nssv15700737 | copy number gain | 180793 | SNP array | Genotyping | 15 |
| nssv15702223 | copy number gain | 199156 | SNP array | Genotyping | 15 |
| nssv15702238 | copy number gain | 223142 | SNP array | Genotyping | 18 |
| nssv15702257 | copy number gain | 218211 | SNP array | Genotyping | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15612460 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15621260 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15623145 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15623526 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15631985 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15633990 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15637112 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15640196 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15643292 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15643344 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15644954 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15644976 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15646495 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15648768 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15649686 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15651328 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15656001 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15658200 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15663864 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15668138 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15677351 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15678012 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15678799 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15678893 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15679807 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15680586 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15682346 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15687740 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15695996 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15696095 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15697942 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15698828 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15699534 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15700737 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15702223 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15702238 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15702257 | Remapped | Pass | NC_000010.11:g.(?_ 46157935)_(4792357 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,923,579 |
| nssv15612460 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15621260 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15623145 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15623526 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15631985 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15633990 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15637112 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15640196 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15643292 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15643344 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15644954 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15644976 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15646495 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15648768 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15649686 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15651328 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15656001 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15658200 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15663864 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15668138 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15677351 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15678012 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15678799 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15678893 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15679807 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15680586 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15682346 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15687740 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15695996 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15696095 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15697942 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15698828 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15699534 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15700737 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15702223 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15702238 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 | ||
| nssv15702257 | Submitted genomic | NC_000010.10:g.(?_ 46966534)_(4817477 9_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 46,966,534 | 48,174,779 |