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dbVar

Database of genomic structural variation

nsv4371406

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:20,628

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 265 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):110,073,402-110,094,029

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4371406	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	110,073,402	110,094,029
nsv4371406	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	110,394,605	110,415,232

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15628069	copy number loss	1-0533-004	SNP array	Genotyping	27
nssv15637164	copy number loss	12-4855-002	SNP array	Genotyping	26
nssv15651875	copy number loss	2-1579-003	SNP array	Genotyping	18
nssv15655648	copy number loss	2-1696-003	SNP array	Genotyping	23
nssv15664834	copy number loss	5-0025-002	SNP array	Genotyping	22
nssv15666265	copy number loss	5-0106-001	SNP array	Genotyping	20
nssv15670799	copy number loss	7-0294-003	SNP array	Genotyping	21
nssv15701894	copy number loss	168209	SNP array	Genotyping	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15628069	Remapped	Perfect	NC_000006.12:g.(?_ 110073402)_(110094 029_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	110,073,402	110,094,029
nssv15637164	Remapped	Perfect	NC_000006.12:g.(?_ 110073402)_(110094 029_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	110,073,402	110,094,029
nssv15651875	Remapped	Perfect	NC_000006.12:g.(?_ 110073402)_(110094 029_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	110,073,402	110,094,029
nssv15655648	Remapped	Perfect	NC_000006.12:g.(?_ 110073402)_(110094 029_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	110,073,402	110,094,029
nssv15664834	Remapped	Perfect	NC_000006.12:g.(?_ 110073402)_(110094 029_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	110,073,402	110,094,029
nssv15666265	Remapped	Perfect	NC_000006.12:g.(?_ 110073402)_(110094 029_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	110,073,402	110,094,029
nssv15670799	Remapped	Perfect	NC_000006.12:g.(?_ 110073402)_(110094 029_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	110,073,402	110,094,029
nssv15701894	Remapped	Perfect	NC_000006.12:g.(?_ 110073402)_(110094 029_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	110,073,402	110,094,029
nssv15628069	Submitted genomic		NC_000006.11:g.(?_ 110394605)_(110415 232_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	110,394,605	110,415,232
nssv15637164	Submitted genomic		NC_000006.11:g.(?_ 110394605)_(110415 232_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	110,394,605	110,415,232
nssv15651875	Submitted genomic		NC_000006.11:g.(?_ 110394605)_(110415 232_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	110,394,605	110,415,232
nssv15655648	Submitted genomic		NC_000006.11:g.(?_ 110394605)_(110415 232_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	110,394,605	110,415,232
nssv15664834	Submitted genomic		NC_000006.11:g.(?_ 110394605)_(110415 232_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	110,394,605	110,415,232
nssv15666265	Submitted genomic		NC_000006.11:g.(?_ 110394605)_(110415 232_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	110,394,605	110,415,232
nssv15670799	Submitted genomic		NC_000006.11:g.(?_ 110394605)_(110415 232_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	110,394,605	110,415,232
nssv15701894	Submitted genomic		NC_000006.11:g.(?_ 110394605)_(110415 232_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	110,394,605	110,415,232

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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