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dbVar

Database of genomic structural variation

nsv4371534

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:20,856

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 299 SVs from 66 studies. See in: genome view

Remapped(Score: Perfect):155,211,057-155,231,912

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4371534	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	155,211,057	155,231,912
nsv4371534	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	155,180,848	155,201,703

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15624996	copy number gain	1-0344-003	SNP array	Genotyping	26
nssv15635729	copy number gain	11-0057-003	SNP array	Genotyping	18
nssv15651497	copy number loss	2-1437-004	SNP array	Genotyping	28

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15624996	Remapped	Perfect	NC_000001.11:g.(?_ 155211057)_(155231 912_?)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	155,211,057	155,231,912
nssv15635729	Remapped	Perfect	NC_000001.11:g.(?_ 155211057)_(155231 912_?)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	155,211,057	155,231,912
nssv15651497	Remapped	Perfect	NC_000001.11:g.(?_ 155211057)_(155231 912_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	155,211,057	155,231,912
nssv15624996	Submitted genomic		NC_000001.10:g.(?_ 155180848)_(155201 703_?)dup	GRCh37 (hg19)		NC_000001.10	Chr1	155,180,848	155,201,703
nssv15635729	Submitted genomic		NC_000001.10:g.(?_ 155180848)_(155201 703_?)dup	GRCh37 (hg19)		NC_000001.10	Chr1	155,180,848	155,201,703
nssv15651497	Submitted genomic		NC_000001.10:g.(?_ 155180848)_(155201 703_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	155,180,848	155,201,703

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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