nsv4371824
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:38,359
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 647 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 311 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 645 SVs from 83 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4371824 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nsv4371824 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nsv4371824 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15620364 | copy number loss | 1-0964-003 | SNP array | Genotyping | 22 |
| nssv15660251 | copy number loss | 3-0718-000 | SNP array | Genotyping | 20 |
| nssv15663384 | copy number loss | 5-0129-001 | SNP array | Genotyping | 23 |
| nssv15670613 | copy number loss | 7-0199-003 | SNP array | Genotyping | 20 |
| nssv15671272 | copy number loss | 7-0280-003 | SNP array | Genotyping | 21 |
| nssv15681414 | copy number loss | OCD103-1585 | SNP array | Genotyping | 20 |
| nssv15684713 | copy number loss | OCD154-896621 | SNP array | Genotyping | 25 |
| nssv15686390 | copy number loss | OCD135-896461 | SNP array | Genotyping | 12 |
| nssv15691111 | copy number loss | OCD26-896511 | SNP array | Genotyping | 28 |
| nssv15697373 | copy number loss | 160092 | SNP array | Genotyping | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15620364 | Remapped | Pass | NW_019805495.1:g.( ?_150992)_(179145_ ?)del | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nssv15660251 | Remapped | Pass | NW_019805495.1:g.( ?_150992)_(179145_ ?)del | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nssv15663384 | Remapped | Pass | NW_019805495.1:g.( ?_150992)_(179145_ ?)del | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nssv15670613 | Remapped | Pass | NW_019805495.1:g.( ?_150992)_(179145_ ?)del | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nssv15671272 | Remapped | Pass | NW_019805495.1:g.( ?_150992)_(179145_ ?)del | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nssv15681414 | Remapped | Pass | NW_019805495.1:g.( ?_150992)_(179145_ ?)del | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nssv15684713 | Remapped | Pass | NW_019805495.1:g.( ?_150992)_(179145_ ?)del | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nssv15686390 | Remapped | Pass | NW_019805495.1:g.( ?_150992)_(179145_ ?)del | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nssv15691111 | Remapped | Pass | NW_019805495.1:g.( ?_150992)_(179145_ ?)del | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nssv15697373 | Remapped | Pass | NW_019805495.1:g.( ?_150992)_(179145_ ?)del | GRCh38.p12 | Second Pass | NW_019805495.1 | Chr11|NW_0 19805495.1 | 150,992 | 179,145 |
| nssv15620364 | Remapped | Perfect | NC_000011.10:g.(?_ 49686810)_(4972516 8_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nssv15660251 | Remapped | Perfect | NC_000011.10:g.(?_ 49686810)_(4972516 8_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nssv15663384 | Remapped | Perfect | NC_000011.10:g.(?_ 49686810)_(4972516 8_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nssv15670613 | Remapped | Perfect | NC_000011.10:g.(?_ 49686810)_(4972516 8_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nssv15671272 | Remapped | Perfect | NC_000011.10:g.(?_ 49686810)_(4972516 8_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nssv15681414 | Remapped | Perfect | NC_000011.10:g.(?_ 49686810)_(4972516 8_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nssv15684713 | Remapped | Perfect | NC_000011.10:g.(?_ 49686810)_(4972516 8_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nssv15686390 | Remapped | Perfect | NC_000011.10:g.(?_ 49686810)_(4972516 8_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nssv15691111 | Remapped | Perfect | NC_000011.10:g.(?_ 49686810)_(4972516 8_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nssv15697373 | Remapped | Perfect | NC_000011.10:g.(?_ 49686810)_(4972516 8_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 49,686,810 | 49,725,168 |
| nssv15620364 | Submitted genomic | NC_000011.9:g.(?_4 9708362)_(49746720 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 | ||
| nssv15660251 | Submitted genomic | NC_000011.9:g.(?_4 9708362)_(49746720 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 | ||
| nssv15663384 | Submitted genomic | NC_000011.9:g.(?_4 9708362)_(49746720 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 | ||
| nssv15670613 | Submitted genomic | NC_000011.9:g.(?_4 9708362)_(49746720 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 | ||
| nssv15671272 | Submitted genomic | NC_000011.9:g.(?_4 9708362)_(49746720 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 | ||
| nssv15681414 | Submitted genomic | NC_000011.9:g.(?_4 9708362)_(49746720 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 | ||
| nssv15684713 | Submitted genomic | NC_000011.9:g.(?_4 9708362)_(49746720 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 | ||
| nssv15686390 | Submitted genomic | NC_000011.9:g.(?_4 9708362)_(49746720 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 | ||
| nssv15691111 | Submitted genomic | NC_000011.9:g.(?_4 9708362)_(49746720 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 | ||
| nssv15697373 | Submitted genomic | NC_000011.9:g.(?_4 9708362)_(49746720 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 49,708,362 | 49,746,720 |