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dbVar

Database of genomic structural variation

nsv4372156

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:161,627

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1478 SVs from 105 studies. See in: genome view

Remapped(Score: Perfect):135,255,807-135,417,433

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4372156	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	135,255,807	135,417,433
nsv4372156	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000009.11	Chr9	138,147,653	138,309,279

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15643933	copy number gain	16-1007-002	SNP array	Genotyping	21
nssv15668429	copy number gain	7-0204-003	SNP array	Genotyping	22
nssv15674236	copy number gain	9-0023-002	SNP array	Genotyping	18
nssv15680751	copy number gain	216159	SNP array	Genotyping	22
nssv15694641	copy number gain	203864	SNP array	Genotyping	23
nssv15695559	copy number gain	207017	SNP array	Genotyping	14

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15643933	Remapped	Perfect	NC_000009.12:g.(?_ 135255807)_(135417 433_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	135,255,807	135,417,433
nssv15668429	Remapped	Perfect	NC_000009.12:g.(?_ 135255807)_(135417 433_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	135,255,807	135,417,433
nssv15674236	Remapped	Perfect	NC_000009.12:g.(?_ 135255807)_(135417 433_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	135,255,807	135,417,433
nssv15680751	Remapped	Perfect	NC_000009.12:g.(?_ 135255807)_(135417 433_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	135,255,807	135,417,433
nssv15694641	Remapped	Perfect	NC_000009.12:g.(?_ 135255807)_(135417 433_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	135,255,807	135,417,433
nssv15695559	Remapped	Perfect	NC_000009.12:g.(?_ 135255807)_(135417 433_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	135,255,807	135,417,433
nssv15643933	Submitted genomic		NC_000009.11:g.(?_ 138147653)_(138309 279_?)dup	GRCh37 (hg19)		NC_000009.11	Chr9	138,147,653	138,309,279
nssv15668429	Submitted genomic		NC_000009.11:g.(?_ 138147653)_(138309 279_?)dup	GRCh37 (hg19)		NC_000009.11	Chr9	138,147,653	138,309,279
nssv15674236	Submitted genomic		NC_000009.11:g.(?_ 138147653)_(138309 279_?)dup	GRCh37 (hg19)		NC_000009.11	Chr9	138,147,653	138,309,279
nssv15680751	Submitted genomic		NC_000009.11:g.(?_ 138147653)_(138309 279_?)dup	GRCh37 (hg19)		NC_000009.11	Chr9	138,147,653	138,309,279
nssv15694641	Submitted genomic		NC_000009.11:g.(?_ 138147653)_(138309 279_?)dup	GRCh37 (hg19)		NC_000009.11	Chr9	138,147,653	138,309,279
nssv15695559	Submitted genomic		NC_000009.11:g.(?_ 138147653)_(138309 279_?)dup	GRCh37 (hg19)		NC_000009.11	Chr9	138,147,653	138,309,279

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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