nsv4372558
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:36
- Validation:Not tested
- Clinical Assertions: No
- Region Size:50,830
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1327 SVs from 93 studies. See in: genome view
Overlapping variant regions from other studies: 1344 SVs from 93 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4372558 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nsv4372558 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15612429 | copy number loss | 1-0669-003 | SNP array | Genotyping | 24 |
| nssv15616458 | copy number loss | 1-0825-003 | SNP array | Genotyping | 22 |
| nssv15616848 | copy number loss | 1-0811-003 | SNP array | Genotyping | 22 |
| nssv15617529 | copy number loss | 1-0153-002 | SNP array | Genotyping | 25 |
| nssv15618083 | copy number loss | 1-0883-003 | SNP array | Genotyping | 18 |
| nssv15625776 | copy number loss | 1-0375-001 | SNP array | Genotyping | 19 |
| nssv15627567 | copy number loss | 1-0489-003 | SNP array | Genotyping | 13 |
| nssv15627580 | copy number loss | 1-0489-004 | SNP array | Genotyping | 18 |
| nssv15628303 | copy number loss | 1-0513-004 | SNP array | Genotyping | 19 |
| nssv15629221 | copy number loss | 1-0566-003 | SNP array | Genotyping | 21 |
| nssv15632230 | copy number loss | 10-1090-004 | SNP array | Genotyping | 26 |
| nssv15637222 | copy number loss | 12-8115-001 | SNP array | Genotyping | 18 |
| nssv15637459 | copy number loss | 13-0095-004 | SNP array | Genotyping | 24 |
| nssv15638055 | copy number loss | 14-0063-003 | SNP array | Genotyping | 21 |
| nssv15639692 | copy number loss | 14-0144-004 | SNP array | Genotyping | 18 |
| nssv15643592 | copy number loss | 2-0003-003 | SNP array | Genotyping | 18 |
| nssv15645562 | copy number loss | 2-0305-002 | SNP array | Genotyping | 30 |
| nssv15646423 | copy number loss | 2-1186-002 | SNP array | Genotyping | 16 |
| nssv15652777 | copy number loss | 2-1540-003 | SNP array | Genotyping | 28 |
| nssv15655921 | copy number loss | 2-1749-003 | SNP array | Genotyping | 19 |
| nssv15657534 | copy number loss | 4-0028-002 | SNP array | Genotyping | 25 |
| nssv15658662 | copy number loss | 3-0544-000 | SNP array | Genotyping | 17 |
| nssv15658679 | copy number loss | 3-0546-000 | SNP array | Genotyping | 15 |
| nssv15661064 | copy number loss | 4-0071-003 | SNP array | Genotyping | 19 |
| nssv15662360 | copy number loss | 4-0083-003 | SNP array | Genotyping | 20 |
| nssv15662711 | copy number loss | 5-0134-001 | SNP array | Genotyping | 23 |
| nssv15663862 | copy number loss | 5-0140-002 | SNP array | Genotyping | 24 |
| nssv15666308 | copy number loss | 5-0124-002 | SNP array | Genotyping | 25 |
| nssv15667441 | copy number loss | 5-0124-003 | SNP array | Genotyping | 21 |
| nssv15667586 | copy number loss | 5-0148-003 | SNP array | Genotyping | 23 |
| nssv15671469 | copy number loss | 7-0308-003 | SNP array | Genotyping | 30 |
| nssv15679805 | copy number loss | 208585 | SNP array | Genotyping | 15 |
| nssv15696093 | copy number loss | 155473 | SNP array | Genotyping | 18 |
| nssv15697047 | copy number loss | 127822 | SNP array | Genotyping | 26 |
| nssv15701392 | copy number loss | 79240 | SNP array | Genotyping | 12 |
| nssv15702182 | copy number loss | 201483 | SNP array | Genotyping | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15612429 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15616458 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15616848 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15617529 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15618083 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15625776 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15627567 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15627580 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15628303 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15629221 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15632230 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15637222 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15637459 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15638055 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15639692 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15643592 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15645562 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15646423 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15652777 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15655921 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15657534 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15658662 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15658679 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15661064 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15662360 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15662711 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15663862 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15666308 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15667441 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15667586 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15671469 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15679805 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15696093 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15697047 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15701392 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15702182 | Remapped | Perfect | NC_000001.11:g.(?_ 1690335)_(1741164_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,690,335 | 1,741,164 |
| nssv15612429 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15616458 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15616848 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15617529 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15618083 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15625776 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15627567 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15627580 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15628303 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15629221 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15632230 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15637222 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15637459 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15638055 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15639692 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15643592 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15645562 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15646423 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15652777 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15655921 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15657534 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15658662 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15658679 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15661064 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15662360 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15662711 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15663862 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15666308 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15667441 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15667586 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15671469 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15679805 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15696093 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15697047 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15701392 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 | ||
| nssv15702182 | Submitted genomic | NC_000001.10:g.(?_ 1621774)_(1672603_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,621,774 | 1,672,603 |