nsv4372893
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:103,982
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2720 SVs from 112 studies. See in: genome view
Overlapping variant regions from other studies: 2614 SVs from 109 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4372893 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nsv4372893 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15611864 | copy number gain | 1-0658-003 | SNP array | Genotyping | 14 |
| nssv15621233 | copy number gain | 1-0989-003 | SNP array | Genotyping | 27 |
| nssv15632954 | copy number gain | 10-1076-005 | SNP array | Genotyping | 21 |
| nssv15639149 | copy number gain | 14-0250-004 | SNP array | Genotyping | 30 |
| nssv15639862 | copy number gain | 14-0227-004 | SNP array | Genotyping | 19 |
| nssv15644986 | copy number gain | 2-0272-001 | SNP array | Genotyping | 22 |
| nssv15646753 | copy number gain | 2-0309-004 | SNP array | Genotyping | 20 |
| nssv15651401 | copy number gain | 2-1430-005 | SNP array | Genotyping | 16 |
| nssv15653043 | copy number gain | 2-1620-003 | SNP array | Genotyping | 26 |
| nssv15654307 | copy number gain | 2-1623-001 | SNP array | Genotyping | 29 |
| nssv15655432 | copy number gain | 3-0107-100 | SNP array | Genotyping | 21 |
| nssv15669897 | copy number gain | 7-0254-001 | SNP array | Genotyping | 20 |
| nssv15669936 | copy number gain | 7-0254-003 | SNP array | Genotyping | 14 |
| nssv15671204 | copy number gain | 7-0274-003 | SNP array | Genotyping | 15 |
| nssv15675427 | copy number gain | 213048 | SNP array | Genotyping | 21 |
| nssv15693776 | copy number gain | 199659 | SNP array | Genotyping | 22 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15611864 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15621233 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15632954 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15639149 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15639862 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15644986 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15646753 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15651401 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15653043 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15654307 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15655432 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15669897 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15669936 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15671204 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15675427 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15693776 | Remapped | Perfect | NC_000010.11:g.(?_ 46217728)_(4632170 9_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,217,728 | 46,321,709 |
| nssv15611864 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15621233 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15632954 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15639149 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15639862 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15644986 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15646753 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15651401 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15653043 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15654307 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15655432 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15669897 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15669936 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15671204 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15675427 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 | ||
| nssv15693776 | Submitted genomic | NC_000010.10:g.(?_ 47588964)_(4769294 5_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 47,588,964 | 47,692,945 |