nsv4372963
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:40
- Validation:Not tested
- Clinical Assertions: No
- Region Size:73,410
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 374 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 293 SVs from 53 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4372963 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nsv4372963 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15618924 | copy number loss | 1-0895-003 | SNP array | Genotyping | 16 |
| nssv15619038 | copy number loss | 1-0181-001 | SNP array | Genotyping | 15 |
| nssv15627383 | copy number loss | 1-0539-002 | SNP array | Genotyping | 22 |
| nssv15628515 | copy number loss | 1-0551-004 | SNP array | Genotyping | 23 |
| nssv15630764 | copy number loss | 1-0621-003 | SNP array | Genotyping | 19 |
| nssv15633287 | copy number loss | 11-0017-003 | SNP array | Genotyping | 14 |
| nssv15641191 | copy number loss | 14-0286-001 | SNP array | Genotyping | 16 |
| nssv15644673 | copy number loss | 16-1000-003 | SNP array | Genotyping | 23 |
| nssv15646536 | copy number loss | 2-1268-002 | SNP array | Genotyping | 29 |
| nssv15653120 | copy number loss | 2-1623-002 | SNP array | Genotyping | 17 |
| nssv15658971 | copy number loss | 4-0056-002 | SNP array | Genotyping | 23 |
| nssv15660544 | copy number loss | 5-0006-003 | SNP array | Genotyping | 24 |
| nssv15660604 | copy number loss | 5-0008-001 | SNP array | Genotyping | 22 |
| nssv15664084 | copy number loss | 231670 | SNP array | Genotyping | 14 |
| nssv15670263 | copy number loss | 7-0291-003 | SNP array | Genotyping | 23 |
| nssv15671500 | copy number loss | 7-0309-003 | SNP array | Genotyping | 21 |
| nssv15672725 | copy number loss | 7-0336-003 | SNP array | Genotyping | 16 |
| nssv15674838 | copy number loss | 209356 | SNP array | Genotyping | 25 |
| nssv15676373 | copy number loss | 209352 | SNP array | Genotyping | 33 |
| nssv15682633 | copy number loss | OCD121-S_1737 | SNP array | Genotyping | 25 |
| nssv15682747 | copy number loss | OCD1130-5299 | SNP array | Genotyping | 19 |
| nssv15684204 | copy number loss | OCD112-B_1664 | SNP array | Genotyping | 19 |
| nssv15684311 | copy number loss | OCD1137-7286 | SNP array | Genotyping | 20 |
| nssv15684894 | copy number loss | OCD15-B_MN-1465 | SNP array | Genotyping | 20 |
| nssv15685250 | copy number loss | OCD1163-0625-7948-3 | SNP array | Genotyping | 26 |
| nssv15685467 | copy number loss | OCD12-S_896223 | SNP array | Genotyping | 21 |
| nssv15686316 | copy number loss | OCD31-S_896572 | SNP array | Genotyping | 28 |
| nssv15686339 | copy number loss | OCD129-8961043 | SNP array | Genotyping | 22 |
| nssv15686670 | copy number loss | OCD16-B_CW-1426 | SNP array | Genotyping | 21 |
| nssv15686856 | copy number loss | OCD29-B_JL-1243 | SNP array | Genotyping | 19 |
| nssv15688121 | copy number loss | 209355 | SNP array | Genotyping | 28 |
| nssv15690808 | copy number loss | OCD17-S_896321 | SNP array | Genotyping | 22 |
| nssv15691240 | copy number loss | OCD29-B_OL-1241 | SNP array | Genotyping | 20 |
| nssv15691413 | copy number loss | OCD42-S_0625-2765-2 | SNP array | Genotyping | 25 |
| nssv15692307 | copy number loss | OCD55-0625-9391-1 | SNP array | Genotyping | 23 |
| nssv15692764 | copy number loss | OCD72-896553 | SNP array | Genotyping | 17 |
| nssv15693583 | copy number loss | OCD94-JW-267 | SNP array | Genotyping | 15 |
| nssv15697169 | copy number loss | 155474 | SNP array | Genotyping | 16 |
| nssv15697960 | copy number loss | 216470 | SNP array | Genotyping | 20 |
| nssv15700418 | copy number loss | 206133 | SNP array | Genotyping | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15618924 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15619038 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15627383 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15628515 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15630764 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15633287 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15641191 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15644673 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15646536 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15653120 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15658971 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15660544 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15660604 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15664084 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15670263 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15671500 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15672725 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15674838 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15676373 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15682633 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15682747 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15684204 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15684311 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15684894 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15685250 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15685467 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15686316 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15686339 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15686670 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15686856 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15688121 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15690808 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15691240 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15691413 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15692307 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15692764 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15693583 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15697169 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15697960 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15700418 | Remapped | Perfect | NC_000010.11:g.(?_ 50070587)_(5014399 6_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 50,070,587 | 50,143,996 |
| nssv15618924 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15619038 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15627383 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15628515 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15630764 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15633287 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15641191 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15644673 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15646536 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15653120 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15658971 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15660544 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15660604 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15664084 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15670263 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15671500 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15672725 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15674838 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15676373 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15682633 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15682747 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15684204 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15684311 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15684894 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15685250 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15685467 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15686316 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15686339 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15686670 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15686856 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15688121 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15690808 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15691240 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15691413 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15692307 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15692764 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15693583 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15697169 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15697960 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 | ||
| nssv15700418 | Submitted genomic | NC_000010.10:g.(?_ 51830347)_(5190375 6_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 51,830,347 | 51,903,756 |