Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv4373261

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:23,331

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 980 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):40,846,784-40,870,114

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4373261	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	40,846,784	40,870,114
nsv4373261	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	41,352,689	41,376,019

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15624003	copy number loss	1-0278-003	SNP array	Genotyping	27
nssv15632511	copy number loss	10-0018-003	SNP array	Genotyping	22
nssv15637468	copy number loss	14-0044-001	SNP array	Genotyping	16
nssv15637500	copy number loss	14-0044-004	SNP array	Genotyping	24
nssv15638524	copy number loss	14-0136-001	SNP array	Genotyping	22
nssv15665380	copy number loss	7-0033-003	SNP array	Genotyping	17
nssv15670884	copy number loss	7-0284-003	SNP array	Genotyping	28
nssv15694091	copy number loss	215689	SNP array	Genotyping	18
nssv15700283	copy number loss	200515	SNP array	Genotyping	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15624003	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087011 4_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,870,114
nssv15632511	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087011 4_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,870,114
nssv15637468	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087011 4_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,870,114
nssv15637500	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087011 4_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,870,114
nssv15638524	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087011 4_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,870,114
nssv15665380	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087011 4_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,870,114
nssv15670884	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087011 4_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,870,114
nssv15694091	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087011 4_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,870,114
nssv15700283	Remapped	Perfect	NC_000019.10:g.(?_ 40846784)_(4087011 4_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,784	40,870,114
nssv15624003	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41376019 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,376,019
nssv15632511	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41376019 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,376,019
nssv15637468	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41376019 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,376,019
nssv15637500	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41376019 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,376,019
nssv15638524	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41376019 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,376,019
nssv15665380	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41376019 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,376,019
nssv15670884	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41376019 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,376,019
nssv15694091	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41376019 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,376,019
nssv15700283	Submitted genomic		NC_000019.9:g.(?_4 1352689)_(41376019 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,689	41,376,019

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI