nsv4373459
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:71,533
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2760 SVs from 112 studies. See in: genome view
Overlapping variant regions from other studies: 2760 SVs from 112 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4373459 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nsv4373459 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15612365 | copy number loss | 1-0665-003 | SNP array | Genotyping | 15 |
| nssv15629957 | copy number loss | 1-0595-004 | SNP array | Genotyping | 25 |
| nssv15630322 | copy number loss | 1-0609-001 | SNP array | Genotyping | 24 |
| nssv15649430 | copy number loss | 2-1391-006 | SNP array | Genotyping | 17 |
| nssv15651324 | copy number loss | 2-1371-001 | SNP array | Genotyping | 18 |
| nssv15654152 | copy number loss | 2-1584-003 | SNP array | Genotyping | 20 |
| nssv15657512 | copy number loss | 4-0027-003 | SNP array | Genotyping | 23 |
| nssv15659456 | copy number loss | 3-0735-001 | SNP array | Genotyping | 14 |
| nssv15660520 | copy number loss | 5-0004-003 | SNP array | Genotyping | 24 |
| nssv15684446 | copy number loss | OCD1142-896953 | SNP array | Genotyping | 24 |
| nssv15701388 | copy number loss | 189611 | SNP array | Genotyping | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15612365 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15629957 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15630322 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15649430 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15651324 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15654152 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15657512 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15659456 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15660520 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15684446 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15701388 | Remapped | Perfect | NC_000006.12:g.(?_ 29896732)_(2996826 4_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 29,896,732 | 29,968,264 |
| nssv15612365 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 | ||
| nssv15629957 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 | ||
| nssv15630322 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 | ||
| nssv15649430 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 | ||
| nssv15651324 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 | ||
| nssv15654152 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 | ||
| nssv15657512 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 | ||
| nssv15659456 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 | ||
| nssv15660520 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 | ||
| nssv15684446 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 | ||
| nssv15701388 | Submitted genomic | NC_000006.11:g.(?_ 29864509)_(2993604 1_?)del | GRCh37 (hg19) | NC_000006.11 | Chr6 | 29,864,509 | 29,936,041 |