nsv4373636

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:20
Validation:Not tested
Clinical Assertions: No
Region Size:47,404

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 430 SVs from 65 studies. See in: genome view

Remapped(Score: Perfect):24,274,223-24,321,626

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4373636	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nsv4373636	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	24,457,025	24,504,428

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15614673	copy number loss	1-0738-003	SNP array	Genotyping	28
nssv15615087	copy number loss	1-0139-002	SNP array	Genotyping	16
nssv15624981	copy number loss	1-0340-004	SNP array	Genotyping	20
nssv15625429	copy number loss	1-0413-004	SNP array	Genotyping	20
nssv15626749	copy number loss	1-0445-002	SNP array	Genotyping	26
nssv15627074	copy number loss	1-0445-003	SNP array	Genotyping	27
nssv15629098	copy number loss	1-0548-004	SNP array	Genotyping	17
nssv15631208	copy number loss	1-0092-002	SNP array	Genotyping	30
nssv15652583	copy number loss	2-1562-001	SNP array	Genotyping	21
nssv15652787	copy number loss	2-1540-003	SNP array	Genotyping	28
nssv15653186	copy number loss	2-1635-004	SNP array	Genotyping	24
nssv15655031	copy number loss	2-1646-003	SNP array	Genotyping	26
nssv15667640	copy number loss	5-1000-003	SNP array	Genotyping	18
nssv15669071	copy number loss	7-0131-003	SNP array	Genotyping	31
nssv15675711	copy number loss	206767	SNP array	Genotyping	17
nssv15691024	copy number loss	OCD23-S_896432	SNP array	Genotyping	17
nssv15693536	copy number loss	OCD72-896511	SNP array	Genotyping	21
nssv15697088	copy number loss	80446	SNP array	Genotyping	26
nssv15702424	copy number loss	158445	SNP array	Genotyping	23
nssv15702718	copy number loss	207953	SNP array	Genotyping	16

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15614673	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15615087	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15624981	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15625429	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15626749	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15627074	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15629098	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15631208	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15652583	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15652787	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15653186	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15655031	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15667640	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15669071	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15675711	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15691024	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15693536	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15697088	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15702424	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15702718	Remapped	Perfect	NC_000019.10:g.(?_ 24274223)_(2432162 6_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,274,223	24,321,626
nssv15614673	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15615087	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15624981	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15625429	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15626749	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15627074	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15629098	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15631208	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15652583	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15652787	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15653186	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15655031	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15667640	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15669071	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15675711	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15691024	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15693536	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15697088	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15702424	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428
nssv15702718	Submitted genomic		NC_000019.9:g.(?_2 4457025)_(24504428 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,457,025	24,504,428

dbVar

Database of genomic structural variation

nsv4373636

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant