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dbVar

Database of genomic structural variation

nsv4374159

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:341,170

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 621 SVs from 30 studies. See in: genome view

Remapped(Score: Perfect):23,696,792-24,037,961

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4374159	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000024.10	ChrY	23,696,792	24,037,961
nsv4374159	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000024.9	ChrY	25,842,939	26,184,108

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15639424	copy number loss	14-0187-001	SNP array	Genotyping	19
nssv15642635	copy number loss	14-0356-001	SNP array	Genotyping	23
nssv15681952	copy number loss	211608	SNP array	Genotyping	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15639424	Remapped	Perfect	NC_000024.10:g.(?_ 23696792)_(2403796 1_?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	23,696,792	24,037,961
nssv15642635	Remapped	Perfect	NC_000024.10:g.(?_ 23696792)_(2403796 1_?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	23,696,792	24,037,961
nssv15681952	Remapped	Perfect	NC_000024.10:g.(?_ 23696792)_(2403796 1_?)del	GRCh38.p12	First Pass	NC_000024.10	ChrY	23,696,792	24,037,961
nssv15639424	Submitted genomic		NC_000024.9:g.(?_2 5842939)_(26184108 _?)del	GRCh37 (hg19)		NC_000024.9	ChrY	25,842,939	26,184,108
nssv15642635	Submitted genomic		NC_000024.9:g.(?_2 5842939)_(26184108 _?)del	GRCh37 (hg19)		NC_000024.9	ChrY	25,842,939	26,184,108
nssv15681952	Submitted genomic		NC_000024.9:g.(?_2 5842939)_(26184108 _?)del	GRCh37 (hg19)		NC_000024.9	ChrY	25,842,939	26,184,108

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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