nsv4375245

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:45
Validation:Not tested
Clinical Assertions: No
Region Size:23,666

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 695 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):55,764,854-55,788,519

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4375245	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nsv4375245	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000016.9	Chr16	55,798,766	55,822,431

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15618331	copy number loss	1-0862-004	SNP array	Genotyping	25
nssv15619761	copy number loss	1-0906-003	SNP array	Genotyping	26
nssv15622705	copy number loss	1-1024-003	SNP array	Genotyping	13
nssv15629736	copy number loss	1-0574-003	SNP array	Genotyping	16
nssv15631464	copy number loss	1-0627-007	SNP array	Genotyping	22
nssv15631622	copy number loss	10-0001-002	SNP array	Genotyping	17
nssv15632474	copy number loss	10-0007-002	SNP array	Genotyping	26
nssv15646395	copy number loss	2-1185-003	SNP array	Genotyping	13
nssv15650407	copy number loss	2-1478-001	SNP array	Genotyping	16
nssv15653038	copy number loss	2-1584-003	SNP array	Genotyping	20
nssv15653804	copy number loss	2-1567-003	SNP array	Genotyping	20
nssv15654902	copy number loss	2-1631-001	SNP array	Genotyping	21
nssv15657228	copy number loss	3-0306-001	SNP array	Genotyping	21
nssv15657546	copy number loss	4-0028-002	SNP array	Genotyping	25
nssv15657891	copy number loss	3-0431-000	SNP array	Genotyping	16
nssv15662739	copy number loss	5-0134-002	SNP array	Genotyping	14
nssv15663432	copy number loss	5-0129-003	SNP array	Genotyping	22
nssv15665001	copy number loss	14AG908	SNP array	Genotyping	23
nssv15665770	copy number loss	7-0094-003	SNP array	Genotyping	24
nssv15670219	copy number loss	7-0266-003	SNP array	Genotyping	19
nssv15671141	copy number loss	7-0302-003	SNP array	Genotyping	17
nssv15672373	copy number loss	7-0314-003	SNP array	Genotyping	21
nssv15680444	copy number loss	193296	SNP array	Genotyping	22
nssv15681864	copy number loss	OCD1118-896763	SNP array	Genotyping	25
nssv15682972	copy number loss	OCD120-S_1733	SNP array	Genotyping	23
nssv15684184	copy number loss	OCD1112-896023	SNP array	Genotyping	15
nssv15684699	copy number loss	OCD153-WD-140-1366	SNP array	Genotyping	19
nssv15687174	copy number loss	OCD33-S_896592	SNP array	Genotyping	9
nssv15687688	copy number loss	OCD173-AH-364_1774	SNP array	Genotyping	19
nssv15687766	copy number loss	OCD18-S_896353	SNP array	Genotyping	21
nssv15688250	copy number loss	210241	SNP array	Genotyping	23
nssv15690282	copy number loss	OCD141-0625-7921-1	SNP array	Genotyping	29
nssv15690728	copy number loss	OCD16-B_MW-1424	SNP array	Genotyping	20
nssv15690914	copy number loss	OCD171-RS-1773	SNP array	Genotyping	19
nssv15691270	copy number loss	OCD3-S_896081	SNP array	Genotyping	20
nssv15692205	copy number loss	OCD67-896281	SNP array	Genotyping	20
nssv15692467	copy number loss	OCD62-CI-218	SNP array	Genotyping	18
nssv15694972	copy number loss	188856	SNP array	Genotyping	26
nssv15695500	copy number loss	168088	SNP array	Genotyping	21
nssv15696763	copy number loss	216810	SNP array	Genotyping	25
nssv15699501	copy number loss	153954	SNP array	Genotyping	21
nssv15699629	copy number loss	168766	SNP array	Genotyping	24
nssv15699651	copy number loss	210959	SNP array	Genotyping	24
nssv15701181	copy number loss	179670	SNP array	Genotyping	18
nssv15701779	copy number loss	154659	SNP array	Genotyping	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15618331	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15619761	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15622705	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15629736	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15631464	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15631622	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15632474	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15646395	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15650407	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15653038	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15653804	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15654902	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15657228	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15657546	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15657891	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15662739	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15663432	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15665001	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15665770	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15670219	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15671141	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15672373	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15680444	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15681864	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15682972	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15684184	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15684699	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15687174	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15687688	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15687766	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15688250	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15690282	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15690728	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15690914	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15691270	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15692205	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15692467	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15694972	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15695500	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15696763	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15699501	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15699629	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15699651	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15701181	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15701779	Remapped	Perfect	NC_000016.10:g.(?_ 55764854)_(5578851 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,764,854	55,788,519
nssv15618331	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15619761	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15622705	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15629736	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15631464	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15631622	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15632474	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15646395	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15650407	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15653038	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15653804	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15654902	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15657228	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15657546	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15657891	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15662739	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15663432	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15665001	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15665770	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15670219	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15671141	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15672373	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15680444	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15681864	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15682972	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15684184	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15684699	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15687174	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15687688	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15687766	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15688250	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15690282	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15690728	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15690914	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15691270	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15692205	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15692467	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15694972	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15695500	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15696763	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15699501	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15699629	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15699651	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15701181	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431
nssv15701779	Submitted genomic		NC_000016.9:g.(?_5 5798766)_(55822431 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,798,766	55,822,431

dbVar

Database of genomic structural variation

nsv4375245

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant