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dbVar

Database of genomic structural variation

nsv4375444

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:32,745

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1021 SVs from 85 studies. See in: genome view

Remapped(Score: Perfect):40,846,721-40,879,465

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4375444	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	40,846,721	40,879,465
nsv4375444	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	41,352,626	41,385,370

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15612574	copy number loss	1-0698-003	SNP array	Genotyping	23
nssv15616080	copy number loss	1-0782-003	SNP array	Genotyping	22
nssv15619475	copy number loss	1-0924-003	SNP array	Genotyping	24
nssv15628701	copy number loss	1-0067-004	SNP array	Genotyping	22
nssv15643051	copy number loss	14-0325-001	SNP array	Genotyping	29
nssv15651836	copy number loss	2-1577-002	SNP array	Genotyping	23
nssv15652969	copy number loss	2-1577-003	SNP array	Genotyping	21
nssv15690128	copy number loss	OCD126-896903	SNP array	Genotyping	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15612574	Remapped	Perfect	NC_000019.10:g.(?_ 40846721)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,721	40,879,465
nssv15616080	Remapped	Perfect	NC_000019.10:g.(?_ 40846721)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,721	40,879,465
nssv15619475	Remapped	Perfect	NC_000019.10:g.(?_ 40846721)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,721	40,879,465
nssv15628701	Remapped	Perfect	NC_000019.10:g.(?_ 40846721)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,721	40,879,465
nssv15643051	Remapped	Perfect	NC_000019.10:g.(?_ 40846721)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,721	40,879,465
nssv15651836	Remapped	Perfect	NC_000019.10:g.(?_ 40846721)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,721	40,879,465
nssv15652969	Remapped	Perfect	NC_000019.10:g.(?_ 40846721)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,721	40,879,465
nssv15690128	Remapped	Perfect	NC_000019.10:g.(?_ 40846721)_(4087946 5_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,846,721	40,879,465
nssv15612574	Submitted genomic		NC_000019.9:g.(?_4 1352626)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,626	41,385,370
nssv15616080	Submitted genomic		NC_000019.9:g.(?_4 1352626)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,626	41,385,370
nssv15619475	Submitted genomic		NC_000019.9:g.(?_4 1352626)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,626	41,385,370
nssv15628701	Submitted genomic		NC_000019.9:g.(?_4 1352626)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,626	41,385,370
nssv15643051	Submitted genomic		NC_000019.9:g.(?_4 1352626)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,626	41,385,370
nssv15651836	Submitted genomic		NC_000019.9:g.(?_4 1352626)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,626	41,385,370
nssv15652969	Submitted genomic		NC_000019.9:g.(?_4 1352626)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,626	41,385,370
nssv15690128	Submitted genomic		NC_000019.9:g.(?_4 1352626)_(41385370 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,352,626	41,385,370

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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