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dbVar

Database of genomic structural variation

nsv4378605

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:44,224

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 257 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):24,192,635-24,236,858

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4378605	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	24,192,635	24,236,858
nsv4378605	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	24,375,437	24,419,660

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15631309	copy number loss	1-0092-004	SNP array	Genotyping	30
nssv15650936	copy number loss	2-1427-003	SNP array	Genotyping	19
nssv15683413	copy number loss	OCD122-S_1638	SNP array	Genotyping	18
nssv15686396	copy number loss	OCD135-896461	SNP array	Genotyping	12

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15631309	Remapped	Perfect	NC_000019.10:g.(?_ 24192635)_(2423685 8_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,192,635	24,236,858
nssv15650936	Remapped	Perfect	NC_000019.10:g.(?_ 24192635)_(2423685 8_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,192,635	24,236,858
nssv15683413	Remapped	Perfect	NC_000019.10:g.(?_ 24192635)_(2423685 8_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,192,635	24,236,858
nssv15686396	Remapped	Perfect	NC_000019.10:g.(?_ 24192635)_(2423685 8_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	24,192,635	24,236,858
nssv15631309	Submitted genomic		NC_000019.9:g.(?_2 4375437)_(24419660 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,375,437	24,419,660
nssv15650936	Submitted genomic		NC_000019.9:g.(?_2 4375437)_(24419660 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,375,437	24,419,660
nssv15683413	Submitted genomic		NC_000019.9:g.(?_2 4375437)_(24419660 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,375,437	24,419,660
nssv15686396	Submitted genomic		NC_000019.9:g.(?_2 4375437)_(24419660 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	24,375,437	24,419,660

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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