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dbVar

Database of genomic structural variation

nsv4378755

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:39,891

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 876 SVs from 62 studies. See in: genome view

Remapped(Score: Perfect):54,742,317-54,782,207

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4378755	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	54,742,317	54,782,207
nsv4378755	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	51,337,073	51,376,963

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15621985	copy number loss	1-1002-003	SNP array	Genotyping	26
nssv15622048	copy number loss	1-1042-003	SNP array	Genotyping	25
nssv15624506	copy number loss	1-0299-001	SNP array	Genotyping	23
nssv15629252	copy number loss	1-0568-001	SNP array	Genotyping	21
nssv15658994	copy number loss	4-0056-003	SNP array	Genotyping	19
nssv15672391	copy number loss	7-0315-003	SNP array	Genotyping	26
nssv15676381	copy number loss	215272	SNP array	Genotyping	25
nssv15680588	copy number loss	215105	SNP array	Genotyping	32
nssv15697573	copy number loss	231160	SNP array	Genotyping	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15621985	Remapped	Perfect	NC_000011.10:g.(?_ 54742317)_(5478220 7_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,742,317	54,782,207
nssv15622048	Remapped	Perfect	NC_000011.10:g.(?_ 54742317)_(5478220 7_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,742,317	54,782,207
nssv15624506	Remapped	Perfect	NC_000011.10:g.(?_ 54742317)_(5478220 7_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,742,317	54,782,207
nssv15629252	Remapped	Perfect	NC_000011.10:g.(?_ 54742317)_(5478220 7_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,742,317	54,782,207
nssv15658994	Remapped	Perfect	NC_000011.10:g.(?_ 54742317)_(5478220 7_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,742,317	54,782,207
nssv15672391	Remapped	Perfect	NC_000011.10:g.(?_ 54742317)_(5478220 7_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,742,317	54,782,207
nssv15676381	Remapped	Perfect	NC_000011.10:g.(?_ 54742317)_(5478220 7_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,742,317	54,782,207
nssv15680588	Remapped	Perfect	NC_000011.10:g.(?_ 54742317)_(5478220 7_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,742,317	54,782,207
nssv15697573	Remapped	Perfect	NC_000011.10:g.(?_ 54742317)_(5478220 7_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	54,742,317	54,782,207
nssv15621985	Submitted genomic		NC_000011.9:g.(?_5 1337073)_(51376963 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	51,337,073	51,376,963
nssv15622048	Submitted genomic		NC_000011.9:g.(?_5 1337073)_(51376963 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	51,337,073	51,376,963
nssv15624506	Submitted genomic		NC_000011.9:g.(?_5 1337073)_(51376963 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	51,337,073	51,376,963
nssv15629252	Submitted genomic		NC_000011.9:g.(?_5 1337073)_(51376963 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	51,337,073	51,376,963
nssv15658994	Submitted genomic		NC_000011.9:g.(?_5 1337073)_(51376963 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	51,337,073	51,376,963
nssv15672391	Submitted genomic		NC_000011.9:g.(?_5 1337073)_(51376963 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	51,337,073	51,376,963
nssv15676381	Submitted genomic		NC_000011.9:g.(?_5 1337073)_(51376963 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	51,337,073	51,376,963
nssv15680588	Submitted genomic		NC_000011.9:g.(?_5 1337073)_(51376963 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	51,337,073	51,376,963
nssv15697573	Submitted genomic		NC_000011.9:g.(?_5 1337073)_(51376963 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	51,337,073	51,376,963

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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