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dbVar

Database of genomic structural variation

nsv437885

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:1,571

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 152 SVs from 40 studies. See in: genome view

Remapped(Score: Perfect):137,311,341-137,312,911

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv437885	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	137,311,341	137,312,911
nsv437885	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	137,030,183	137,031,753
nsv437885	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000003.8	Chr3	138,351,092	138,352,662

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv471400	copy number loss	NA19102	SNP array	SNP genotyping analysis	9
nssv471402	copy number loss	NA19103	SNP array	SNP genotyping analysis	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv471400	Remapped	Perfect	NC_000003.12:g.(?_ 137311341)_(137312 911_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	137,311,341	137,312,911
nssv471402	Remapped	Perfect	NC_000003.12:g.(?_ 137311341)_(137312 911_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	137,311,341	137,312,911
nssv471400	Remapped	Perfect	NC_000003.11:g.(?_ 137030183)_(137031 753_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	137,030,183	137,031,753
nssv471402	Remapped	Perfect	NC_000003.11:g.(?_ 137030183)_(137031 753_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	137,030,183	137,031,753
nssv471400	Submitted genomic		NC_000003.8:g.(?_1 38351092)_(1383526 62_?)del	NCBI34 (hg16)		NC_000003.8	Chr3	138,351,092	138,352,662
nssv471402	Submitted genomic		NC_000003.8:g.(?_1 38351092)_(1383526 62_?)del	NCBI34 (hg16)		NC_000003.8	Chr3	138,351,092	138,352,662

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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