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dbVar

Database of genomic structural variation

nsv437899

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:33,097

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 519 SVs from 79 studies. See in: genome view

Remapped(Score: Perfect):176,178,790-176,211,886

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv437899	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	176,178,790	176,211,886
nsv437899	Remapped	Perfect	GRCh38.p12	PATCHES	Second Pass	NW_019805488.1	Chr3\|NW_01 9805488.1	63,301	96,397
nsv437899	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	175,896,578	175,929,674
nsv437899	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000003.8	Chr3	177,217,491	177,250,587

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv467877	copy number loss	NA18523	SNP array	SNP genotyping analysis	12

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv467877	Remapped	Perfect	NW_019805488.1:g.( ?_63301)_(96397_?) del	GRCh38.p12	Second Pass	NW_019805488.1	Chr3\|NW_01 9805488.1	63,301	96,397
nssv467877	Remapped	Perfect	NC_000003.12:g.(?_ 176178790)_(176211 886_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	176,178,790	176,211,886
nssv467877	Remapped	Perfect	NC_000003.11:g.(?_ 175896578)_(175929 674_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	175,896,578	175,929,674
nssv467877	Submitted genomic		NC_000003.8:g.(?_1 77217491)_(1772505 87_?)del	NCBI34 (hg16)		NC_000003.8	Chr3	177,217,491	177,250,587

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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