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dbVar

Database of genomic structural variation

nsv4379106

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:434,933

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1315 SVs from 76 studies. See in: genome view

Remapped(Score: Perfect):191,589,357-192,024,289

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4379106	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	191,589,357	192,024,289
nsv4379106	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	191,307,146	191,742,078

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15641985	copy number gain	15-1127-001	SNP array	Genotyping	21
nssv15642021	copy number gain	15-1127-004	SNP array	Genotyping	32
nssv15644570	copy number gain	15-1127-002	SNP array	Genotyping	17

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15641985	Remapped	Perfect	NC_000003.12:g.(?_ 191589357)_(192024 289_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,589,357	192,024,289
nssv15642021	Remapped	Perfect	NC_000003.12:g.(?_ 191589357)_(192024 289_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,589,357	192,024,289
nssv15644570	Remapped	Perfect	NC_000003.12:g.(?_ 191589357)_(192024 289_?)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	191,589,357	192,024,289
nssv15641985	Submitted genomic		NC_000003.11:g.(?_ 191307146)_(191742 078_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	191,307,146	191,742,078
nssv15642021	Submitted genomic		NC_000003.11:g.(?_ 191307146)_(191742 078_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	191,307,146	191,742,078
nssv15644570	Submitted genomic		NC_000003.11:g.(?_ 191307146)_(191742 078_?)dup	GRCh37 (hg19)		NC_000003.11	Chr3	191,307,146	191,742,078

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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