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dbVar

Database of genomic structural variation

nsv437915

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:15,179

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 254 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):94,672,528-94,687,706

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv437915	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	94,672,528	94,687,706
nsv437915	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	95,138,084	95,153,262
nsv437915	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000001.7	Chr1	94,609,885	94,625,063

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv467797	copy number loss	NA18505	SNP array	SNP genotyping analysis	23
nssv467808	copy number loss	NA18503	SNP array	SNP genotyping analysis	30
nssv467753	copy number loss	NA18505	SNP array	SNP genotyping analysis	23
nssv467764	copy number loss	NA18503	SNP array	SNP genotyping analysis	30
nssv467775	copy number loss	NA19141	SNP array	SNP genotyping analysis	10
nssv467786	copy number loss	NA19142	SNP array	SNP genotyping analysis	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv467797	Remapped	Perfect	NC_000001.11:g.(?_ 94672528)_(9468770 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	94,672,528	94,687,706
nssv467808	Remapped	Perfect	NC_000001.11:g.(?_ 94672528)_(9468770 6_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	94,672,528	94,687,706
nssv467753	Remapped	Perfect	NC_000001.11:g.(?_ 94685310)_(9468623 1_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	94,685,310	94,686,231
nssv467764	Remapped	Perfect	NC_000001.11:g.(?_ 94685310)_(9468623 1_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	94,685,310	94,686,231
nssv467775	Remapped	Perfect	NC_000001.11:g.(?_ 94685310)_(9468623 1_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	94,685,310	94,686,231
nssv467786	Remapped	Perfect	NC_000001.11:g.(?_ 94685310)_(9468623 1_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	94,685,310	94,686,231
nssv467797	Remapped	Perfect	NC_000001.10:g.(?_ 95138084)_(9515326 2_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	95,138,084	95,153,262
nssv467808	Remapped	Perfect	NC_000001.10:g.(?_ 95138084)_(9515326 2_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	95,138,084	95,153,262
nssv467753	Remapped	Perfect	NC_000001.10:g.(?_ 95150866)_(9515178 7_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	95,150,866	95,151,787
nssv467764	Remapped	Perfect	NC_000001.10:g.(?_ 95150866)_(9515178 7_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	95,150,866	95,151,787
nssv467775	Remapped	Perfect	NC_000001.10:g.(?_ 95150866)_(9515178 7_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	95,150,866	95,151,787
nssv467786	Remapped	Perfect	NC_000001.10:g.(?_ 95150866)_(9515178 7_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	95,150,866	95,151,787
nssv467797	Submitted genomic		NC_000001.7:g.(?_9 4609885)_(94625063 _?)del	NCBI34 (hg16)		NC_000001.7	Chr1	94,609,885	94,625,063
nssv467808	Submitted genomic		NC_000001.7:g.(?_9 4609885)_(94625063 _?)del	NCBI34 (hg16)		NC_000001.7	Chr1	94,609,885	94,625,063
nssv467753	Submitted genomic		NC_000001.7:g.(?_9 4622667)_(94623588 _?)del	NCBI34 (hg16)		NC_000001.7	Chr1	94,622,667	94,623,588
nssv467764	Submitted genomic		NC_000001.7:g.(?_9 4622667)_(94623588 _?)del	NCBI34 (hg16)		NC_000001.7	Chr1	94,622,667	94,623,588
nssv467775	Submitted genomic		NC_000001.7:g.(?_9 4622667)_(94623588 _?)del	NCBI34 (hg16)		NC_000001.7	Chr1	94,622,667	94,623,588
nssv467786	Submitted genomic		NC_000001.7:g.(?_9 4622667)_(94623588 _?)del	NCBI34 (hg16)		NC_000001.7	Chr1	94,622,667	94,623,588

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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