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dbVar

Database of genomic structural variation

nsv437952

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:12,088

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 653 SVs from 68 studies. See in: genome view

Remapped(Score: Perfect):188,300,053-188,312,140

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv437952	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	188,300,053	188,312,140
nsv437952	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	189,221,207	189,233,294
nsv437952	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000004.8	Chr4	189,917,097	189,929,184

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv468701	copy number loss	NA18960	SNP array	SNP genotyping analysis	11
nssv468702	copy number loss	NA18965	SNP array	SNP genotyping analysis	9

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv468701	Remapped	Perfect	NC_000004.12:g.(?_ 188300053)_(188312 140_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	188,300,053	188,312,140
nssv468702	Remapped	Perfect	NC_000004.12:g.(?_ 188300053)_(188312 140_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	188,300,053	188,312,140
nssv468701	Remapped	Perfect	NC_000004.11:g.(?_ 189221207)_(189233 294_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	189,221,207	189,233,294
nssv468702	Remapped	Perfect	NC_000004.11:g.(?_ 189221207)_(189233 294_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	189,221,207	189,233,294
nssv468701	Submitted genomic		NC_000004.8:g.(?_1 89917097)_(1899291 84_?)del	NCBI34 (hg16)		NC_000004.8	Chr4	189,917,097	189,929,184
nssv468702	Submitted genomic		NC_000004.8:g.(?_1 89917097)_(1899291 84_?)del	NCBI34 (hg16)		NC_000004.8	Chr4	189,917,097	189,929,184

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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