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dbVar

Database of genomic structural variation

nsv437954

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:842

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 176 SVs from 27 studies. See in: genome view

Remapped(Score: Perfect):110,088,850-110,089,691

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv437954	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	110,088,850	110,089,691
nsv437954	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	109,424,551	109,425,392
nsv437954	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000005.7	Chr5	109,500,767	109,501,608

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv468705	copy number loss	NA12005	SNP array	SNP genotyping analysis	22
nssv468706	copy number loss	NA10839	SNP array	SNP genotyping analysis	34

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv468705	Remapped	Perfect	NC_000005.10:g.(?_ 110088850)_(110089 691_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	110,088,850	110,089,691
nssv468706	Remapped	Perfect	NC_000005.10:g.(?_ 110088850)_(110089 691_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	110,088,850	110,089,691
nssv468705	Remapped	Perfect	NC_000005.9:g.(?_1 09424551)_(1094253 92_?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	109,424,551	109,425,392
nssv468706	Remapped	Perfect	NC_000005.9:g.(?_1 09424551)_(1094253 92_?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	109,424,551	109,425,392
nssv468705	Submitted genomic		NC_000005.7:g.(?_1 09500767)_(1095016 08_?)del	NCBI34 (hg16)		NC_000005.7	Chr5	109,500,767	109,501,608
nssv468706	Submitted genomic		NC_000005.7:g.(?_1 09500767)_(1095016 08_?)del	NCBI34 (hg16)		NC_000005.7	Chr5	109,500,767	109,501,608

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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