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dbVar

Database of genomic structural variation

nsv4381460

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:48,667

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 566 SVs from 76 studies. See in: genome view

Remapped(Score: Perfect):97,501,736-97,550,402

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4381460	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	97,501,736	97,550,402
nsv4381460	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000002.11	Chr2	98,118,199	98,166,865

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15615163	copy number loss	1-0749-003	SNP array	Genotyping	20
nssv15623132	copy number loss	1-1055-003	SNP array	Genotyping	19
nssv15632178	copy number loss	10-0013-004	SNP array	Genotyping	24
nssv15644999	copy number loss	2-0272-001	SNP array	Genotyping	22
nssv15654272	copy number loss	2-1592-003	SNP array	Genotyping	21
nssv15663482	copy number loss	5-0131-002	SNP array	Genotyping	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15615163	Remapped	Perfect	NC_000002.12:g.(?_ 97501736)_(9755040 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,501,736	97,550,402
nssv15623132	Remapped	Perfect	NC_000002.12:g.(?_ 97501736)_(9755040 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,501,736	97,550,402
nssv15632178	Remapped	Perfect	NC_000002.12:g.(?_ 97501736)_(9755040 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,501,736	97,550,402
nssv15644999	Remapped	Perfect	NC_000002.12:g.(?_ 97501736)_(9755040 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,501,736	97,550,402
nssv15654272	Remapped	Perfect	NC_000002.12:g.(?_ 97501736)_(9755040 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,501,736	97,550,402
nssv15663482	Remapped	Perfect	NC_000002.12:g.(?_ 97501736)_(9755040 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	97,501,736	97,550,402
nssv15615163	Submitted genomic		NC_000002.11:g.(?_ 98118199)_(9816686 5_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,118,199	98,166,865
nssv15623132	Submitted genomic		NC_000002.11:g.(?_ 98118199)_(9816686 5_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,118,199	98,166,865
nssv15632178	Submitted genomic		NC_000002.11:g.(?_ 98118199)_(9816686 5_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,118,199	98,166,865
nssv15644999	Submitted genomic		NC_000002.11:g.(?_ 98118199)_(9816686 5_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,118,199	98,166,865
nssv15654272	Submitted genomic		NC_000002.11:g.(?_ 98118199)_(9816686 5_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,118,199	98,166,865
nssv15663482	Submitted genomic		NC_000002.11:g.(?_ 98118199)_(9816686 5_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	98,118,199	98,166,865

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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