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dbVar

Database of genomic structural variation

nsv438162

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,902

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 589 SVs from 42 studies. See in: genome view

Remapped(Score: Perfect):155,545,002-155,547,903

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv438162	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	155,545,002	155,547,903
nsv438162	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	154,774,663	154,777,564
nsv438162	Remapped	Perfect	GRCh37.p13	PATCHES	Second Pass	NW_003871103.3	ChrX\|NW_00 3871103.3	2,978,981	2,981,882
nsv438162	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000023.7	ChrX	153,206,494	153,209,395

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv470236	copy number loss	NA12003	SNP array	SNP genotyping analysis	16

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv470236	Remapped	Perfect	NC_000023.11:g.(?_ 155545002)_(155547 903_?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	155,545,002	155,547,903
nssv470236	Remapped	Perfect	NW_003871103.3:g.( ?_2978981)_(298188 2_?)del	GRCh37.p13	Second Pass	NW_003871103.3	ChrX\|NW_00 3871103.3	2,978,981	2,981,882
nssv470236	Remapped	Perfect	NC_000023.10:g.(?_ 154774663)_(154777 564_?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	154,774,663	154,777,564
nssv470236	Submitted genomic		NC_000023.7:g.(?_1 53206494)_(1532093 95_?)del	NCBI34 (hg16)		NC_000023.7	ChrX	153,206,494	153,209,395

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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