nsv4382162
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:32,820
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 731 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 731 SVs from 81 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4382162 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nsv4382162 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15619254 | copy number loss | 1-0931-005 | SNP array | Genotyping | 21 |
| nssv15624296 | copy number loss | 1-0045-001 | SNP array | Genotyping | 15 |
| nssv15630045 | copy number loss | 1-0599-005 | SNP array | Genotyping | 23 |
| nssv15641019 | copy number loss | 14-0323-002 | SNP array | Genotyping | 22 |
| nssv15648719 | copy number loss | 2-1283-002 | SNP array | Genotyping | 21 |
| nssv15653824 | copy number loss | 2-1567-004 | SNP array | Genotyping | 13 |
| nssv15657708 | copy number loss | 4-0043-001 | SNP array | Genotyping | 18 |
| nssv15683046 | copy number loss | 235982S | SNP array | Genotyping | 26 |
| nssv15695216 | copy number loss | 156892 | SNP array | Genotyping | 15 |
| nssv15701631 | copy number loss | 223694 | SNP array | Genotyping | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15619254 | Remapped | Perfect | NC_000003.12:g.(?_ 65200174)_(6523299 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nssv15624296 | Remapped | Perfect | NC_000003.12:g.(?_ 65200174)_(6523299 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nssv15630045 | Remapped | Perfect | NC_000003.12:g.(?_ 65200174)_(6523299 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nssv15641019 | Remapped | Perfect | NC_000003.12:g.(?_ 65200174)_(6523299 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nssv15648719 | Remapped | Perfect | NC_000003.12:g.(?_ 65200174)_(6523299 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nssv15653824 | Remapped | Perfect | NC_000003.12:g.(?_ 65200174)_(6523299 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nssv15657708 | Remapped | Perfect | NC_000003.12:g.(?_ 65200174)_(6523299 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nssv15683046 | Remapped | Perfect | NC_000003.12:g.(?_ 65200174)_(6523299 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nssv15695216 | Remapped | Perfect | NC_000003.12:g.(?_ 65200174)_(6523299 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nssv15701631 | Remapped | Perfect | NC_000003.12:g.(?_ 65200174)_(6523299 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 65,200,174 | 65,232,993 |
| nssv15619254 | Submitted genomic | NC_000003.11:g.(?_ 65185849)_(6521866 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 | ||
| nssv15624296 | Submitted genomic | NC_000003.11:g.(?_ 65185849)_(6521866 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 | ||
| nssv15630045 | Submitted genomic | NC_000003.11:g.(?_ 65185849)_(6521866 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 | ||
| nssv15641019 | Submitted genomic | NC_000003.11:g.(?_ 65185849)_(6521866 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 | ||
| nssv15648719 | Submitted genomic | NC_000003.11:g.(?_ 65185849)_(6521866 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 | ||
| nssv15653824 | Submitted genomic | NC_000003.11:g.(?_ 65185849)_(6521866 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 | ||
| nssv15657708 | Submitted genomic | NC_000003.11:g.(?_ 65185849)_(6521866 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 | ||
| nssv15683046 | Submitted genomic | NC_000003.11:g.(?_ 65185849)_(6521866 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 | ||
| nssv15695216 | Submitted genomic | NC_000003.11:g.(?_ 65185849)_(6521866 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 | ||
| nssv15701631 | Submitted genomic | NC_000003.11:g.(?_ 65185849)_(6521866 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 65,185,849 | 65,218,668 |