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dbVar

Database of genomic structural variation

nsv4385879

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:39,906

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 360 SVs from 77 studies. See in: genome view

Remapped(Score: Perfect):59,047,641-59,087,546

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4385879	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	59,047,641	59,087,546
nsv4385879	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	58,815,114	58,855,019

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15616711	copy number gain	1-0877-003	SNP array	Genotyping	31
nssv15656290	copy number gain	4-0001-004	SNP array	Genotyping	19
nssv15660750	copy number gain	5-0065-001	SNP array	Genotyping	20
nssv15669387	copy number loss	7-0240-002	SNP array	Genotyping	18
nssv15675603	copy number gain	171442	SNP array	Genotyping	29

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15616711	Remapped	Perfect	NC_000011.10:g.(?_ 59047641)_(5908754 6_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,047,641	59,087,546
nssv15656290	Remapped	Perfect	NC_000011.10:g.(?_ 59047641)_(5908754 6_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,047,641	59,087,546
nssv15660750	Remapped	Perfect	NC_000011.10:g.(?_ 59047641)_(5908754 6_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,047,641	59,087,546
nssv15669387	Remapped	Perfect	NC_000011.10:g.(?_ 59047641)_(5908754 6_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,047,641	59,087,546
nssv15675603	Remapped	Perfect	NC_000011.10:g.(?_ 59047641)_(5908754 6_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,047,641	59,087,546
nssv15616711	Submitted genomic		NC_000011.9:g.(?_5 8815114)_(58855019 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	58,815,114	58,855,019
nssv15656290	Submitted genomic		NC_000011.9:g.(?_5 8815114)_(58855019 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	58,815,114	58,855,019
nssv15660750	Submitted genomic		NC_000011.9:g.(?_5 8815114)_(58855019 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	58,815,114	58,855,019
nssv15669387	Submitted genomic		NC_000011.9:g.(?_5 8815114)_(58855019 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,815,114	58,855,019
nssv15675603	Submitted genomic		NC_000011.9:g.(?_5 8815114)_(58855019 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	58,815,114	58,855,019

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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