nsv4386560
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:31,352
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 450 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 450 SVs from 77 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4386560 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nsv4386560 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15618163 | copy number loss | 1-0890-003 | SNP array | Genotyping | 25 |
| nssv15630037 | copy number loss | 1-0599-005 | SNP array | Genotyping | 23 |
| nssv15637755 | copy number loss | 14-0170-001 | SNP array | Genotyping | 29 |
| nssv15637776 | copy number loss | 14-0170-003 | SNP array | Genotyping | 20 |
| nssv15641809 | copy number loss | 14-0276-002 | SNP array | Genotyping | 21 |
| nssv15644583 | copy number loss | 15-1127-003 | SNP array | Genotyping | 16 |
| nssv15650845 | copy number loss | 2-1408-001 | SNP array | Genotyping | 19 |
| nssv15651383 | copy number loss | 2-1428-003 | SNP array | Genotyping | 21 |
| nssv15659357 | copy number loss | 3-0662-000 | SNP array | Genotyping | 33 |
| nssv15659586 | copy number loss | 3-0775-000 | SNP array | Genotyping | 18 |
| nssv15672324 | copy number loss | 7-0312-003 | SNP array | Genotyping | 22 |
| nssv15684820 | copy number loss | OCD167-8961212 | SNP array | Genotyping | 14 |
| nssv15686276 | copy number loss | OCD3-S_896083 | SNP array | Genotyping | 27 |
| nssv15686603 | copy number loss | OCD151-SH-1297(190321) | SNP array | Genotyping | 16 |
| nssv15695590 | copy number loss | 209030 | SNP array | Genotyping | 19 |
| nssv15699499 | copy number loss | 153954 | SNP array | Genotyping | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15618163 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15630037 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15637755 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15637776 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15641809 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15644583 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15650845 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15651383 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15659357 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15659586 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15672324 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15684820 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15686276 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15686603 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15695590 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15699499 | Remapped | Perfect | NC_000014.9:g.(?_8 5818410)_(85849761 _?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 85,818,410 | 85,849,761 |
| nssv15618163 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15630037 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15637755 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15637776 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15641809 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15644583 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15650845 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15651383 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15659357 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15659586 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15672324 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15684820 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15686276 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15686603 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15695590 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 | ||
| nssv15699499 | Submitted genomic | NC_000014.8:g.(?_8 6284754)_(86316105 _?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 86,284,754 | 86,316,105 |