nsv4386776

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:36
Validation:Not tested
Clinical Assertions: No
Region Size:25,828

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 353 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):78,474,565-78,500,392

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4386776	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nsv4386776	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000002.11	Chr2	78,701,691	78,727,518

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15611710	copy number loss	1-0112-001	SNP array	Genotyping	16
nssv15612938	copy number loss	1-0692-003	SNP array	Genotyping	17
nssv15613089	copy number loss	1-0112-004	SNP array	Genotyping	26
nssv15621928	copy number loss	1-0973-003	SNP array	Genotyping	17
nssv15630176	copy number loss	1-0551-004	SNP array	Genotyping	23
nssv15630184	copy number loss	1-0555-001	SNP array	Genotyping	14
nssv15637822	copy number loss	14-0179-001	SNP array	Genotyping	22
nssv15646056	copy number loss	16-1011-005	SNP array	Genotyping	16
nssv15647270	copy number loss	2-1086-002	SNP array	Genotyping	18
nssv15647287	copy number loss	2-1086-003	SNP array	Genotyping	22
nssv15647699	copy number loss	2-0318-003	SNP array	Genotyping	22
nssv15649188	copy number loss	2-1259-003	SNP array	Genotyping	19
nssv15651840	copy number loss	2-1577-002	SNP array	Genotyping	23
nssv15652971	copy number loss	2-1577-003	SNP array	Genotyping	21
nssv15653790	copy number loss	2-1567-001	SNP array	Genotyping	25
nssv15657763	copy number loss	4-0048-001	SNP array	Genotyping	23
nssv15661131	copy number loss	4-0079-003	SNP array	Genotyping	18
nssv15661322	copy number loss	5-0067-003	SNP array	Genotyping	23
nssv15665251	copy number loss	LHSC-GA-15-613	SNP array	Genotyping	19
nssv15666047	copy number loss	5-0034-003	SNP array	Genotyping	20
nssv15668774	copy number loss	7-0227-003	SNP array	Genotyping	17
nssv15673172	copy number loss	9-0029-001	SNP array	Genotyping	18
nssv15673916	copy number loss	9-0025-002	SNP array	Genotyping	22
nssv15673943	copy number loss	9-0025-003	SNP array	Genotyping	24
nssv15679096	copy number loss	240256S	SNP array	Genotyping	19
nssv15683825	copy number loss	OCD13-S_896243	SNP array	Genotyping	20
nssv15685346	copy number loss	OCD118-B_1711	SNP array	Genotyping	16
nssv15685385	copy number loss	OCD118-S_1713	SNP array	Genotyping	18
nssv15691121	copy number loss	OCD26-896511	SNP array	Genotyping	28
nssv15691586	copy number loss	OCD55-0625-9391-3	SNP array	Genotyping	20
nssv15692335	copy number loss	OCD55-0625-9391-2	SNP array	Genotyping	22
nssv15692532	copy number loss	OCD65-RS-1249	SNP array	Genotyping	21
nssv15694168	copy number loss	OCD81-896772	SNP array	Genotyping	18
nssv15695702	copy number loss	OCD99-1550	SNP array	Genotyping	31
nssv15698152	copy number loss	125563	SNP array	Genotyping	21
nssv15700951	copy number loss	144445	SNP array	Genotyping	25

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15611710	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15612938	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15613089	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15621928	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15630176	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15630184	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15637822	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15646056	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15647270	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15647287	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15647699	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15649188	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15651840	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15652971	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15653790	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15657763	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15661131	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15661322	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15665251	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15666047	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15668774	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15673172	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15673916	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15673943	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15679096	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15683825	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15685346	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15685385	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15691121	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15691586	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15692335	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15692532	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15694168	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15695702	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15698152	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15700951	Remapped	Perfect	NC_000002.12:g.(?_ 78474565)_(7850039 2_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,474,565	78,500,392
nssv15611710	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15612938	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15613089	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15621928	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15630176	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15630184	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15637822	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15646056	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15647270	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15647287	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15647699	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15649188	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15651840	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15652971	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15653790	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15657763	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15661131	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15661322	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15665251	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15666047	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15668774	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15673172	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15673916	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15673943	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15679096	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15683825	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15685346	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15685385	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15691121	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15691586	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15692335	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15692532	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15694168	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15695702	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15698152	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518
nssv15700951	Submitted genomic		NC_000002.11:g.(?_ 78701691)_(7872751 8_?)del	GRCh37 (hg19)		NC_000002.11	Chr2	78,701,691	78,727,518

dbVar

Database of genomic structural variation

nsv4386776

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant