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dbVar

Database of genomic structural variation

nsv4386964

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:26,258

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1049 SVs from 78 studies. See in: genome view

Remapped(Score: Perfect):1,467,514-1,493,771

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4386964	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	1,467,514	1,493,771
nsv4386964	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	1,402,894	1,429,151

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15645531	copy number loss	2-0299-005	SNP array	Genotyping	26
nssv15653944	copy number loss	2-1618-003	SNP array	Genotyping	19
nssv15672039	copy number loss	9-0012-003	SNP array	Genotyping	23
nssv15683838	copy number loss	OCD130-8961051	SNP array	Genotyping	20
nssv15685619	copy number loss	OCD168-8961233	SNP array	Genotyping	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15645531	Remapped	Perfect	NC_000001.11:g.(?_ 1467514)_(1493771_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,467,514	1,493,771
nssv15653944	Remapped	Perfect	NC_000001.11:g.(?_ 1467514)_(1493771_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,467,514	1,493,771
nssv15672039	Remapped	Perfect	NC_000001.11:g.(?_ 1467514)_(1493771_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,467,514	1,493,771
nssv15683838	Remapped	Perfect	NC_000001.11:g.(?_ 1467514)_(1493771_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,467,514	1,493,771
nssv15685619	Remapped	Perfect	NC_000001.11:g.(?_ 1467514)_(1493771_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,467,514	1,493,771
nssv15645531	Submitted genomic		NC_000001.10:g.(?_ 1402894)_(1429151_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,402,894	1,429,151
nssv15653944	Submitted genomic		NC_000001.10:g.(?_ 1402894)_(1429151_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,402,894	1,429,151
nssv15672039	Submitted genomic		NC_000001.10:g.(?_ 1402894)_(1429151_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,402,894	1,429,151
nssv15683838	Submitted genomic		NC_000001.10:g.(?_ 1402894)_(1429151_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,402,894	1,429,151
nssv15685619	Submitted genomic		NC_000001.10:g.(?_ 1402894)_(1429151_ ?)del	GRCh37 (hg19)		NC_000001.10	Chr1	1,402,894	1,429,151

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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