nsv4387174
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:14
- Validation:Not tested
- Clinical Assertions: No
- Region Size:31,914
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2075 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 2139 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 1928 SVs from 87 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4387174 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nsv4387174 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nsv4387174 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15615262 | copy number loss | 1-0765-003 | SNP array | Genotyping | 26 |
| nssv15620943 | copy number loss | 1-0967-003 | SNP array | Genotyping | 14 |
| nssv15622002 | copy number loss | 1-0191-004 | SNP array | Genotyping | 22 |
| nssv15624734 | copy number loss | 1-0340-001 | SNP array | Genotyping | 15 |
| nssv15628875 | copy number loss | 1-0559-003 | SNP array | Genotyping | 28 |
| nssv15639050 | copy number loss | 14-0246-002 | SNP array | Genotyping | 22 |
| nssv15647535 | copy number loss | 2-0225-002 | SNP array | Genotyping | 23 |
| nssv15649231 | copy number loss | 2-1266-002 | SNP array | Genotyping | 24 |
| nssv15651528 | copy number loss | 2-1452-003 | SNP array | Genotyping | 22 |
| nssv15659450 | copy number loss | 3-0735-001 | SNP array | Genotyping | 14 |
| nssv15665697 | copy number loss | 7-0085-003 | SNP array | Genotyping | 22 |
| nssv15669432 | copy number loss | 7-0240-004 | SNP array | Genotyping | 21 |
| nssv15670691 | copy number loss | 7-0240-006 | SNP array | Genotyping | 21 |
| nssv15689089 | copy number loss | 234385S | SNP array | Genotyping | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15615262 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15620943 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15622002 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15624734 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15628875 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15639050 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15647535 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15649231 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15651528 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15659450 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15665697 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15669432 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15670691 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15689089 | Remapped | Good | NT_187600.1:g.(?_9 26564)_(958477_?)d el | GRCh38.p12 | Second Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 926,564 | 958,477 |
| nssv15615262 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15620943 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15622002 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15624734 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15628875 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15639050 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15647535 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15649231 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15651528 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15659450 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15665697 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15669432 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15670691 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15689089 | Remapped | Good | NC_000014.9:g.(?_1 06434885)_(1064667 98_?)del | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 106,434,885 | 106,466,798 |
| nssv15615262 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15620943 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15622002 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15624734 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15628875 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15639050 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15647535 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15649231 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15651528 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15659450 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15665697 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15669432 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15670691 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 | ||
| nssv15689089 | Submitted genomic | NC_000014.8:g.(?_1 06890795)_(1069227 23_?)del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 106,890,795 | 106,922,723 |