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dbVar

Database of genomic structural variation

nsv4387260

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:79,140

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2619 SVs from 101 studies. See in: genome view

Remapped(Score: Perfect):78,252,864-78,332,003

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4387260	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	78,252,864	78,332,003
nsv4387260	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	78,962,581	79,041,720

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15644573	copy number loss	15-1127-002	SNP array	Genotyping	17
nssv15649149	copy number loss	2-1258-001	SNP array	Genotyping	27
nssv15671018	copy number loss	7-0297-003	SNP array	Genotyping	24
nssv15680680	copy number loss	215270	SNP array	Genotyping	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15644573	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7833200 3_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,332,003
nssv15649149	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7833200 3_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,332,003
nssv15671018	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7833200 3_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,332,003
nssv15680680	Remapped	Perfect	NC_000006.12:g.(?_ 78252864)_(7833200 3_?)del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,252,864	78,332,003
nssv15644573	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7904172 0_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,041,720
nssv15649149	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7904172 0_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,041,720
nssv15671018	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7904172 0_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,041,720
nssv15680680	Submitted genomic		NC_000006.11:g.(?_ 78962581)_(7904172 0_?)del	GRCh37 (hg19)		NC_000006.11	Chr6	78,962,581	79,041,720

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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