nsv4388509

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:40
Validation:Not tested
Clinical Assertions: No
Region Size:86,227

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1549 SVs from 100 studies. See in: genome view

Remapped(Score: Perfect):294,911-381,137

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4388509	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	294,911	381,137
nsv4388509	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	294,911	381,137

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15611904	copy number gain	1-0112-003	SNP array	Genotyping	23
nssv15612759	copy number gain	1-0651-003	SNP array	Genotyping	31
nssv15615817	copy number gain	1-0785-003	SNP array	Genotyping	13
nssv15616451	copy number gain	1-0825-001	SNP array	Genotyping	25
nssv15619462	copy number gain	1-0923-003	SNP array	Genotyping	15
nssv15620183	copy number gain	1-0951-003	SNP array	Genotyping	25
nssv15621419	copy number gain	1-1015-003	SNP array	Genotyping	22
nssv15623210	copy number gain	1-0224-003	SNP array	Genotyping	23
nssv15624285	copy number gain	1-0263-002	SNP array	Genotyping	24
nssv15624552	copy number gain	1-0299-003	SNP array	Genotyping	19
nssv15624571	copy number gain	1-0299-004	SNP array	Genotyping	17
nssv15625448	copy number gain	1-0414-001	SNP array	Genotyping	15
nssv15629281	copy number gain	1-0539-004	SNP array	Genotyping	22
nssv15633160	copy number gain	11-0008-003	SNP array	Genotyping	23
nssv15633739	copy number gain	12-4168-003	SNP array	Genotyping	31
nssv15643546	copy number gain	16-1013-003	SNP array	Genotyping	14
nssv15648927	copy number gain	2-1094-002	SNP array	Genotyping	26
nssv15650605	copy number gain	2-1336-002	SNP array	Genotyping	17
nssv15650760	copy number gain	2-1363-003	SNP array	Genotyping	26
nssv15653453	copy number gain	2-1559-004	SNP array	Genotyping	18
nssv15654078	copy number gain	2-1690-002	SNP array	Genotyping	24
nssv15655250	copy number gain	2-1711-003	SNP array	Genotyping	17
nssv15658645	copy number gain	3-0542-000	SNP array	Genotyping	16
nssv15659917	copy number gain	5-0001-002	SNP array	Genotyping	23
nssv15662729	copy number gain	5-0134-001	SNP array	Genotyping	23
nssv15668747	copy number gain	7-0216-003	SNP array	Genotyping	26
nssv15668802	copy number gain	7-0228-003	SNP array	Genotyping	18
nssv15671216	copy number gain	7-0274-003	SNP array	Genotyping	15
nssv15675752	copy number gain	172009	SNP array	Genotyping	26
nssv15679611	copy number gain	182123	SNP array	Genotyping	24
nssv15679915	copy number gain	211602	SNP array	Genotyping	24
nssv15685973	copy number gain	OCD173-WH-1775	SNP array	Genotyping	13
nssv15686993	copy number gain	OCD38-S_0625-1127-2	SNP array	Genotyping	18
nssv15687696	copy number gain	OCD173-AH-364_1774	SNP array	Genotyping	19
nssv15690135	copy number gain	OCD126-896903	SNP array	Genotyping	19
nssv15691682	copy number gain	OCD75-JB-1215	SNP array	Genotyping	23
nssv15691703	copy number gain	OCD75-SB-1213	SNP array	Genotyping	18
nssv15691900	copy number gain	OCD82-896792	SNP array	Genotyping	27
nssv15693581	copy number gain	OCD94-JW-1490	SNP array	Genotyping	21
nssv15696529	copy number gain	159785	SNP array	Genotyping	19

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15611904	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15612759	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15615817	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15616451	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15619462	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15620183	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15621419	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15623210	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15624285	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15624552	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15624571	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15625448	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15629281	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15633160	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15633739	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15643546	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15648927	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15650605	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15650760	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15653453	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15654078	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15655250	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15658645	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15659917	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15662729	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15668747	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15668802	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15671216	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15675752	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15679611	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15679915	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15685973	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15686993	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15687696	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15690135	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15691682	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15691703	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15691900	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15693581	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15696529	Remapped	Perfect	NC_000006.12:g.(?_ 294911)_(381137_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	294,911	381,137
nssv15611904	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15612759	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15615817	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15616451	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15619462	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15620183	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15621419	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15623210	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15624285	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15624552	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15624571	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15625448	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15629281	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15633160	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15633739	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15643546	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15648927	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15650605	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15650760	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15653453	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15654078	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15655250	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15658645	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15659917	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15662729	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15668747	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15668802	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15671216	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15675752	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15679611	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15679915	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15685973	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15686993	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15687696	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15690135	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15691682	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15691703	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15691900	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15693581	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137
nssv15696529	Submitted genomic		NC_000006.11:g.(?_ 294911)_(381137_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	294,911	381,137

dbVar

Database of genomic structural variation

nsv4388509

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant