nsv4674306
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:5,112,030
- Description:GRCh37/hg19 3p14.2-14.1(chr3:60449667-65561638)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 12584 SVs from 122 studies. See in: genome view
Overlapping variant regions from other studies: 12594 SVs from 122 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4674306 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 60,463,934 | 65,575,963 |
| nsv4674306 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 60,449,667 | 65,561,638 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16207905 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV001005439.1, VCV000814449.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16207905 | Remapped | Good | NC_000003.12:g.(?_ 60463934)_(6557596 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 60,463,934 | 65,575,963 |
| nssv16207905 | Submitted genomic | NC_000003.11:g.(?_ 60449667)_(6556163 8_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 60,449,667 | 65,561,638 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv16207905 | GRCh37: NC_000003.11:g.(?_60449667)_(65561638_?)del | copy number loss | germline | not provided | Pathogenic | ClinVar | RCV001005439.1, VCV000814449.1 | 1 |