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dbVar

Database of genomic structural variation

nsv469820

Organism: Homo sapiens

Study:nstd29 (Locke et al. 2006)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:150,441

Publication(s):Locke et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 636 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):10,771,224-10,921,664

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv469820	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	10,771,224	10,921,664
nsv469820	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	10,771,336	10,921,776
nsv469820	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000005.7	Chr5	10,824,074	10,974,514

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv1672592	copy number loss	BAC aCGH	Probe signal intensity
nssv1673090	copy number loss	BAC aCGH	Probe signal intensity
nssv1673600	copy number loss	BAC aCGH	Probe signal intensity
nssv1674725	copy number loss	BAC aCGH	Probe signal intensity
nssv1675070	copy number loss	BAC aCGH	Probe signal intensity
nssv1675573	copy number loss	BAC aCGH	Probe signal intensity

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1672592	Remapped	Perfect	NC_000005.10:g.(?_ 10771224)_(1092166 4_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	10,771,224	10,921,664
nssv1673090	Remapped	Perfect	NC_000005.10:g.(?_ 10771224)_(1092166 4_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	10,771,224	10,921,664
nssv1673600	Remapped	Perfect	NC_000005.10:g.(?_ 10771224)_(1092166 4_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	10,771,224	10,921,664
nssv1674725	Remapped	Perfect	NC_000005.10:g.(?_ 10771224)_(1092166 4_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	10,771,224	10,921,664
nssv1675070	Remapped	Perfect	NC_000005.10:g.(?_ 10771224)_(1092166 4_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	10,771,224	10,921,664
nssv1675573	Remapped	Perfect	NC_000005.10:g.(?_ 10771224)_(1092166 4_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	10,771,224	10,921,664
nssv1672592	Remapped	Perfect	NC_000005.9:g.(?_1 0771336)_(10921776 _?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	10,771,336	10,921,776
nssv1673090	Remapped	Perfect	NC_000005.9:g.(?_1 0771336)_(10921776 _?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	10,771,336	10,921,776
nssv1673600	Remapped	Perfect	NC_000005.9:g.(?_1 0771336)_(10921776 _?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	10,771,336	10,921,776
nssv1674725	Remapped	Perfect	NC_000005.9:g.(?_1 0771336)_(10921776 _?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	10,771,336	10,921,776
nssv1675070	Remapped	Perfect	NC_000005.9:g.(?_1 0771336)_(10921776 _?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	10,771,336	10,921,776
nssv1675573	Remapped	Perfect	NC_000005.9:g.(?_1 0771336)_(10921776 _?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	10,771,336	10,921,776
nssv1672592	Submitted genomic		NC_000005.7:g.(?_1 0824074)_(10974514 _?)del	NCBI34 (hg16)		NC_000005.7	Chr5	10,824,074	10,974,514
nssv1673090	Submitted genomic		NC_000005.7:g.(?_1 0824074)_(10974514 _?)del	NCBI34 (hg16)		NC_000005.7	Chr5	10,824,074	10,974,514
nssv1673600	Submitted genomic		NC_000005.7:g.(?_1 0824074)_(10974514 _?)del	NCBI34 (hg16)		NC_000005.7	Chr5	10,824,074	10,974,514
nssv1674725	Submitted genomic		NC_000005.7:g.(?_1 0824074)_(10974514 _?)del	NCBI34 (hg16)		NC_000005.7	Chr5	10,824,074	10,974,514
nssv1675070	Submitted genomic		NC_000005.7:g.(?_1 0824074)_(10974514 _?)del	NCBI34 (hg16)		NC_000005.7	Chr5	10,824,074	10,974,514
nssv1675573	Submitted genomic		NC_000005.7:g.(?_1 0824074)_(10974514 _?)del	NCBI34 (hg16)		NC_000005.7	Chr5	10,824,074	10,974,514

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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