nsv5010625
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:99
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 116 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 113 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 8 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5010625 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000017.11 | Chr17 | 64,536,414 | 64,536,512 | ||
| nsv5010625 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000017.10 | Chr17 | 62,532,532 | 62,532,630 |
| nsv5010625 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003315947.1 | Chr17|NW_0 03315947.1 | 340,261 | 340,359 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16567000 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16567000 | Submitted genomic | NC_000017.11:g.645 36414_64536512del | GRCh38 (hg38) | NC_000017.11 | Chr17 | 64,536,414 | 64,536,512 | ||
| nssv16567000 | Remapped | Perfect | NW_003315947.1:g.3 40261_340359del | GRCh37.p13 | First Pass | NW_003315947.1 | Chr17|NW_0 03315947.1 | 340,261 | 340,359 |
| nssv16567000 | Remapped | Perfect | NC_000017.10:g.625 32532_62532630del | GRCh37.p13 | Second Pass | NC_000017.10 | Chr17 | 62,532,532 | 62,532,630 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16567000 | <0.001 | 1 | 29246 |