nsv511549
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:11,514
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 754 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 754 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 486 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511549 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 76,598,669 | 76,599,001 | 76,602,844 | 76,610,182 |
| nsv511549 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 76,891,010 | 76,891,342 | 76,895,185 | 76,902,523 |
| nsv511549 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 74,678,065 | 74,678,397 | 74,682,240 | 74,689,578 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626173 | copy number gain | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626173 | Remapped | Perfect | NC_000015.10:g.(76 598669_76599001)_( 76602844_76610182) dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 76,598,669 | 76,599,001 | 76,602,844 | 76,610,182 |
| nssv626173 | Remapped | Perfect | NC_000015.9:g.(768 91010_76891342)_(7 6895185_76902523)d up | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 76,891,010 | 76,891,342 | 76,895,185 | 76,902,523 |
| nssv626173 | Submitted genomic | NC_000015.8:g.(746 78065_74678397)_(7 4682240_74689578)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 74,678,065 | 74,678,397 | 74,682,240 | 74,689,578 |