nsv5858570
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,368
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 197 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 191 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 47 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5858570 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000007.14 | Chr7 | 72,944,399 | 72,946,766 | ||
| nsv5858570 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000007.13 | Chr7 | 72,414,938 | 72,417,305 |
| nsv5858570 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871064.1 | Chr7|NW_00 3871064.1 | 473,635 | 476,002 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Copy number |
|---|---|---|---|---|
| nssv17502741 | copy number variation | Sequencing | Sequence alignment | 0 |
| nssv17502742 | copy number variation | Sequencing | Sequence alignment | 2 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv17502741 | Submitted genomic | GRCh38 (hg38) | NC_000007.14 | Chr7 | 72,944,399 | 72,946,766 | ||
| nssv17502742 | Submitted genomic | GRCh38 (hg38) | NC_000007.14 | Chr7 | 72,944,399 | 72,946,766 | ||
| nssv17502741 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871064.1 | Chr7|NW_00 3871064.1 | 473,635 | 476,002 |
| nssv17502742 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871064.1 | Chr7|NW_00 3871064.1 | 473,635 | 476,002 |
| nssv17502741 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000007.13 | Chr7 | 72,414,938 | 72,417,305 |
| nssv17502742 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000007.13 | Chr7 | 72,414,938 | 72,417,305 |