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dbVar

Database of genomic structural variation

nsv5883027

Organism: Homo sapiens

Study:nstd209 (Almarri et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:134

Publication(s):Almarri et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 136 SVs from 24 studies. See in: genome view

Submitted genomic53,945,963-53,946,096

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5883027	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000001.11	Chr1	53,945,963	53,946,096
nsv5883027	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	54,411,636	54,411,769

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17370619	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17370619	Submitted genomic		NC_000001.11:g.539 45963_53946096del	GRCh38 (hg38)		NC_000001.11	Chr1	53,945,963	53,946,096
nssv17370619	Remapped	Perfect	NC_000001.10:g.544 11636_54411769del	GRCh37.p13	First Pass	NC_000001.10	Chr1	54,411,636	54,411,769

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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