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dbVar

Database of genomic structural variation

nsv6133073

Organism: Homo sapiens

Study:nstd213 (Pham et al. 2021)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:270,004

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1156 SVs from 80 studies. See in: genome view

Remapped(Score: Good):7,286,681-7,556,684

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6133073	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	7,286,681	7,556,684
nsv6133073	Remapped	Pass	GRCh38.p12	PATCHES	Second Pass	NW_016107299.1	Chr17\|NW_0 16107299.1	1	154,723
nsv6133073	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000017.10	Chr17	7,190,000	7,460,001

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv17680670	copy number loss	SAMN20524659	Sequencing	Paired-end mapping	203

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17680670	Remapped	Pass	NW_016107299.1:g.1 _154723del	GRCh38.p12	Second Pass	NW_016107299.1	Chr17\|NW_0 16107299.1	1	154,723
nssv17680670	Remapped	Good	NC_000017.11:g.728 6681_7556684del	GRCh38.p12	First Pass	NC_000017.11	Chr17	7,286,681	7,556,684
nssv17680670	Submitted genomic		NC_000017.10:g.719 0000_7460001del	GRCh37 (hg19)		NC_000017.10	Chr17	7,190,000	7,460,001

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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